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Intel 2016.1.150 compilation problems
From: |
Balázs Hajgató |
Subject: |
Intel 2016.1.150 compilation problems |
Date: |
Wed, 9 Mar 2016 22:11:02 +0100 |
User-agent: |
Mozilla/5.0 (Windows NT 10.0; WOW64; rv:38.0) Gecko/20100101 Thunderbird/38.6.0 |
Dear All,
I am trying to compile Octave 4.0.0 with Intel 2016.1.150 compilers. I
believe that this fails due to some problems in libgnu:
make[3]: Entering directory
`/tmp/hajgato/build/Octave/4.0.0/intel-2016a/octave-4.0.0/liboctave'
/bin/sh ../libtool --tag=CXX --mode=compile icpc -DHAVE_CONFIG_H -I.
-I.. -I./array -I./cruft/misc -Inumeric -I./numeric -Ioperators
-I./operators -I./system -I./util -I../libgnu -I../libgnu
-I/apps/brussel/ivybridge/software/imkl/11.3.1.150-iimpi-8.1.5-GCC-4.9.3-2.25/mkl/include
-I/apps/brussel/ivybridge/software/libX11/1.6.3-intel-2016a/include
-I/apps/brussel/ivybridge/software/libXext/1.3.3-intel-2016a/include
-I/apps/brussel/ivybridge/software/libXft/2.3.2-intel-2016a/include
-I/apps/brussel/ivybridge/software/PCRE/8.38-intel-2016a/include
-I/apps/brussel/ivybridge/software/ncurses/6.0-intel-2016a/include
-I/apps/brussel/ivybridge/software/libreadline/6.3-intel-2016a/include
-I/apps/brussel/ivybridge/software/cURL/7.47.0-intel-2016a/include
-I/apps/brussel/ivybridge/software/FFTW/3.3.4-intel-2016a/include
-I/apps/brussel/ivybridge/software/FLTK/1.3.3-intel-2016a/include
-I/apps/brussel/ivybridge/software/fontconfig/2.11.94-intel-2016a/include -I/apps/brussel/ivybridge/software/freetype/2.6.2-intel-2016a/include
-I/apps/brussel/ivybridge/software/GLPK/4.58-intel-2016a/include
-I/apps/brussel/ivybridge/software/GL2PS/1.3.9-intel-2016a/include
-I/apps/brussel/ivybridge/software/Java/1.8.0_72/include
-I/apps/brussel/ivybridge/software/zlib/1.2.8-intel-2016a/include
-I/apps/brussel/ivybridge/software/LLVM/3.7.1-intel-2016a/include
-I/apps/brussel/ivybridge/software/Mesa/11.1.2-intel-2016a/include
-I/apps/brussel/ivybridge/software/libGLU/9.0.0-intel-2016a/include
-I/apps/brussel/ivybridge/software/Qhull/2015.2-intel-2016a/include
-I/apps/brussel/ivybridge/software/Qt/4.8.7-intel-2016a/include
-I/apps/brussel/ivybridge/software/HDF5/1.8.16-intel-2016a-serial/include -I/apps/brussel/ivybridge/software/SuiteSparse/4.5.1-intel-2016a-METIS-5.1.0/include
-I/apps/brussel/ivybridge/software/GraphicsMagick/1.3.23-intel-2016a/include
-I/apps/brussel/ivybridge/software/flex/2.6.0-intel-2016a/include
-I/apps/brussel/ivybridge/software/libtool/2.4.6-intel-2016a/include
-fopenmp -Wall -W -Wshadow -Wold-style-cast -Wformat -Wpointer-arith
-Wwrite-strings -Wcast-align -Wcast-qual -O2 -xHost -ftz
-fp-speculation=safe -fp-model source -MT
array/array_libarray_la-Array-b.lo -MD -MP -MF
array/.deps/array_libarray_la-Array-b.Tpo -c -o
array/array_libarray_la-Array-b.lo `test -f 'array/Array-b.cc' || echo
'./'`array/Array-b.cc
libtool: compile: icpc -DHAVE_CONFIG_H -I. -I.. -I./array
-I./cruft/misc -Inumeric -I./numeric -Ioperators -I./operators
-I./system -I./util -I../libgnu -I../libgnu
-I/apps/brussel/ivybridge/software/imkl/11.3.1.150-iimpi-8.1.5-GCC-4.9.3-2.25/mkl/include
-I/apps/brussel/ivybridge/software/libX11/1.6.3-intel-2016a/include
-I/apps/brussel/ivybridge/software/libXext/1.3.3-intel-2016a/include
-I/apps/brussel/ivybridge/software/libXft/2.3.2-intel-2016a/include
-I/apps/brussel/ivybridge/software/PCRE/8.38-intel-2016a/include
-I/apps/brussel/ivybridge/software/ncurses/6.0-intel-2016a/include
-I/apps/brussel/ivybridge/software/libreadline/6.3-intel-2016a/include
-I/apps/brussel/ivybridge/software/cURL/7.47.0-intel-2016a/include
-I/apps/brussel/ivybridge/software/FFTW/3.3.4-intel-2016a/include
-I/apps/brussel/ivybridge/software/FLTK/1.3.3-intel-2016a/include
-I/apps/brussel/ivybridge/software/fontconfig/2.11.94-intel-2016a/include -I/apps/brussel/ivybridge/software/freetype/2.6.2-intel-2016a/include
-I/apps/brussel/ivybridge/software/GLPK/4.58-intel-2016a/include
-I/apps/brussel/ivybridge/software/GL2PS/1.3.9-intel-2016a/include
-I/apps/brussel/ivybridge/software/Java/1.8.0_72/include
-I/apps/brussel/ivybridge/software/zlib/1.2.8-intel-2016a/include
-I/apps/brussel/ivybridge/software/LLVM/3.7.1-intel-2016a/include
-I/apps/brussel/ivybridge/software/Mesa/11.1.2-intel-2016a/include
-I/apps/brussel/ivybridge/software/libGLU/9.0.0-intel-2016a/include
-I/apps/brussel/ivybridge/software/Qhull/2015.2-intel-2016a/include
-I/apps/brussel/ivybridge/software/Qt/4.8.7-intel-2016a/include
-I/apps/brussel/ivybridge/software/HDF5/1.8.16-intel-2016a-serial/include -I/apps/brussel/ivybridge/software/SuiteSparse/4.5.1-intel-2016a-METIS-5.1.0/include
-I/apps/brussel/ivybridge/software/GraphicsMagick/1.3.23-intel-2016a/include
-I/apps/brussel/ivybridge/software/flex/2.6.0-intel-2016a/include
-I/apps/brussel/ivybridge/software/libtool/2.4.6-intel-2016a/include
-fopenmp -Wall -W -Wshadow -Wold-style-cast -Wformat -Wpointer-arith
-Wwrite-strings -Wcast-align -Wcast-qual -O2 -xHost -ftz
-fp-speculation=safe -fp-model source -MT
array/array_libarray_la-Array-b.lo -MD -MP -MF
array/.deps/array_libarray_la-Array-b.Tpo -c array/Array-b.cc -fPIC
-DPIC -o array/.libs/array_libarray_la-Array-b.o
icpc: command line warning #10006: ignoring unknown option
'-Wold-style-cast'
icpc: command line warning #10006: ignoring unknown option '-Wcast-align'
In file included from /usr/include/sys/types.h(220),
from ../libgnu/sys/types.h(28),
from /usr/include/stdlib.h(320),
from ../libgnu/stdlib.h(36),
from
/vsc/apps/brussel/ivybridge/software/GCCcore/4.9.3/bin/../include/c++/4.9.3/cstdlib(72),
from
/vsc/apps/brussel/ivybridge/software/GCCcore/4.9.3/bin/../include/c++/4.9.3/bits/stl_algo.h(59),
from
/vsc/apps/brussel/ivybridge/software/GCCcore/4.9.3/bin/../include/c++/4.9.3/algorithm(62),
from array/Array.h(32),
from array/Array-b.cc(29):
../libgnu/sys/select.h(598): error: declaration is incompatible with
previous "select" (declared at line 109 of "/usr/include/sys/select.h")
_GL_CXXALIAS_SYS (select, int,
^
compilation aborted for array/Array-b.cc (code 2)
make[3]: *** [array/array_libarray_la-Array-b.lo] Error 1
make[3]: Leaving directory
`/tmp/hajgato/build/Octave/4.0.0/intel-2016a/octave-4.0.0/liboctave'
make[2]: *** [all] Error 2
make[2]: Leaving directory
`/tmp/hajgato/build/Octave/4.0.0/intel-2016a/octave-4.0.0/liboctave'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory
`/tmp/hajgato/build/Octave/4.0.0/intel-2016a/octave-4.0.0'
make: *** [all] Error 2
(at easybuild/tools/run.py:397 in parse_cmd_output)
You can check the configure.log, configure.status and the
configure/build outputs:
config.log https://gist.github.com/hajgato/10389cf249832aabb777
config.status https://gist.github.com/hajgato/7f9ff6fa1d1d12bccfe0
config/build output https://gist.github.com/hajgato/bea2eebd8908a86cace2
Regards,
Balazs Hajgato
--
HPC/VSC Support and System Administration
Computing Center
ULB/VUB
Avenue Adolphe Byullaan, 91 - CP 197
1050 Brussels
Belgium
- Intel 2016.1.150 compilation problems,
Balázs Hajgató <=
- Re: Intel 2016.1.150 compilation problems, Paul Eggert, 2016/03/09
- Re: Intel 2016.1.150 compilation problems, Balázs Hajgató, 2016/03/09
- Re: Intel 2016.1.150 compilation problems, Paul Eggert, 2016/03/13
- Re: Intel 2016.1.150 compilation problems, Balázs Hajgató, 2016/03/13
- Re: Intel 2016.1.150 compilation problems, Paul Eggert, 2016/03/14
- Re: Intel 2016.1.150 compilation problems, Balazs Hajgato, 2016/03/15
- Re: Intel 2016.1.150 compilation problems, Paul Eggert, 2016/03/15
- Re: Intel 2016.1.150 compilation problems, Balázs Hajgató, 2016/03/15
- Re: Intel 2016.1.150 compilation problems, Paul Eggert, 2016/03/15
- Re: Intel 2016.1.150 compilation problems, Balazs Hajgato, 2016/03/16