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Regarding unable to run wget on compute node


From: Vanshika Saxena
Subject: Regarding unable to run wget on compute node
Date: Tue, 18 Apr 2023 14:02:41 +0530

Respected sir,

   I have a file.txt that contains several ftp links to various SRR files
in the following format:-
wget '
ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR848/002/SRR8482202/SRR8482202_1.fastq.gz
'
When, I use these files on my local Ubuntu 22.04 system or HPC CLuster
login node, the program runs and returns the fastq files but when, this
program is run through a bash script and executed on compute node it gives
the following error:
--2023-04-18 12:17:07--
ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR848/002/SRR8482202/SRR8482202_1.fastq.gz
           => �^�^�SRR8482202_1.fastq.gz�^�^�
Resolving ftp.sra.ebi.ac.uk (ftp.sra.ebi.ac.uk)... failed: Temporary
failure in name resolution.
wget: unable to resolve host address �^�^�ftp.sra.ebi.ac.uk�^�^�
--2023-04-18 12:17:22--
ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR848/002/SRR8482202/SRR8482202_2.fastq.gz
           => �^�^�SRR8482202_2.fastq.gz�^�^�
Resolving ftp.sra.ebi.ac.uk (ftp.sra.ebi.ac.uk)... failed: Name or service
not known.
wget: unable to resolve host address �^�^�ftp.sra.ebi.ac.uk�^�^�

Kindly help what can be done in this respect as I have large amount of
files and I need server to download these files.

Thanking You,
Vanshika Saxena


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