bug#66493: closed ([PATCH] gnu: Add r-complexupset.)

[GNU bug Tracking System]

Your message dated Thu, 12 Oct 2023 21:27:13 +0200
with message-id <87fs2fljyv.fsf@elephly.net>
and subject line [PATCH] gnu: Add r-complexupset.
has caused the debbugs.gnu.org bug report #66493,
regarding [PATCH] gnu: Add r-complexupset.
to be marked as done.

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-- 
66493: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=66493
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-complexupset.
>
>
>
>
> Date: 
>
> Thu, 12 Oct 2023 12:46:24 +0000
>
>
>
>
> * gnu/packages/bioinformatics.scm (r-complexupset): New variable.
> ---
>  gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++
>  1 file changed, 28 insertions(+)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index cb0bdf766e..bd936cd1e3 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -810,6 +810,34 @@ (define-public r-codeandroll2
>  These functions are used by MarkdownReports, ggExpress, and SeuratUtils.")
>        (license license:gpl3))))
>  
> +(define-public r-complexupset
> +  (let ((commit "bb3f10a35eb2033754620aacdedc1d52357f13e4")
> +        (revision "1"))
> +    (package
> +      (name "r-complexupset")
> +      (version (git-version "1.3.5" revision commit))
> +      (source
> +       (origin
> +         (method git-fetch)
> +         (uri (git-reference
> +               (url "https://github.com/krassowski/complex-upset";)
> +               (commit commit)))
> +         (file-name (git-file-name name version))
> +         (sha256
> +          (base32 "1yid15515yhfzmbs8z991kk62hzdrlgbz6p81aj6csg3db0xy2xc"))))
> +      (properties `((upstream-name . "ComplexUpset")))
> +      (build-system r-build-system)
> +      (propagated-inputs (list r-colorspace r-ggplot2 r-patchwork r-scales))
> +      (native-inputs (list r-knitr))
> +      (home-page "https://github.com/krassowski/complex-upset";)
> +      (synopsis "Create complex upset plots using 'ggplot2' components")
> +      (description
> +       "@code{UpSet} plots improve set overlap visualizations over Venn 
> Diagrams.
> +Striving to bring the best of the @code{UpSetR} and ggplot2', this
> +package offers a way to create complex overlap visualisations,
> +using simple and familiar tools.")
> +      (license license:expat))))
> +
>  (define-public r-conospanel
>    (let ((commit "39e76b201a783b4e92fd615010a735a61746fbb9")
>          (revision "1"))
>
> base-commit: 1328c4cca531318e3ed90c6aecb522a5b22a4bcc
> -- 
> 2.34.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-complexupset.
>
>
>
>
> Date: 
>
> Thu, 12 Oct 2023 21:27:13 +0200
>
>
>
>
> User-agent: 
>
> mu4e 1.10.7; emacs 29.1
>
>
>
>
> Thanks for the patch.  I applied a variant that takes the sources from
> CRAN.
>
> -- 
> Ricardo
>
>
> --- End Message ---