bug#66515: closed ([PATCH] gnu: Add r-mafh5-gnomad-v3-1-2-grch38.)

[GNU bug Tracking System]

Your message dated Fri, 13 Oct 2023 14:49:42 +0200
with message-id <87bkd2lm9u.fsf@elephly.net>
and subject line [PATCH] gnu: Add r-mafh5-gnomad-v3-1-2-grch38.
has caused the debbugs.gnu.org bug report #66515,
regarding [PATCH] gnu: Add r-mafh5-gnomad-v3-1-2-grch38.
to be marked as done.

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-- 
66515: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=66515
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> --- Begin Message ---
>
>
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> Subject: 
>
> [PATCH] gnu: Add r-mafh5-gnomad-v3-1-2-grch38.
>
>
>
>
> Date: 
>
> Fri, 13 Oct 2023 12:12:09 +0000
>
>
>
>
> * gnu/packages/bioconductor.scm (r-mafh5-gnomad-v3-1-2-grch38): New variable.
> ---
>  gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
>  1 file changed, 30 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index f6946b72c8..c3e65dda56 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -1711,6 +1711,36 @@ (define-public r-italicsdata
>      ;; Expanded from GPL
>      (license (list license:gpl2+ license:gpl3+))))
>  
> +(define-public r-mafh5-gnomad-v3-1-2-grch38
> +  (package
> +    (name "r-mafh5-gnomad-v3-1-2-grch38")
> +    (version "3.15.0")
> +    (source
> +     (origin
> +       (method url-fetch)
> +       (uri (bioconductor-uri "MafH5.gnomAD.v3.1.2.GRCh38" version
> +                              'annotation))
> +       (sha256
> +        (base32 "18hzw7f41ii16qpm3ch516b773900l1m1id5z6a763m01fg0mhiq"))))
> +    (properties `((upstream-name . "MafH5.gnomAD.v3.1.2.GRCh38")))
> +    (build-system r-build-system)
> +    (propagated-inputs (list r-bsgenome
> +                             r-genomeinfodb
> +                             r-genomicranges
> +                             r-genomicscores
> +                             r-hdf5array
> +                             r-iranges
> +                             r-rhdf5
> +                             r-s4vectors))
> +    (home-page "https://bioconductor.org/packages/MafH5.gnomAD.v3.1.2.GRCh38";)
> +    (synopsis
> +     "Minor allele frequency data from gnomAD version 3.1.2 for GRCh38")
> +    (description
> +     "This package is designed to store minor allele frequency data.
> +It retrieves this data from the Genome Aggregation Database
> +(@code{gnomAD} version 3.1.2) for the human genome version GRCh38.")
> +    (license license:artistic2.0)))
> +
>  (define-public r-macrophage
>    (package
>      (name "r-macrophage")
>
> base-commit: 844dd7dac76fa491a052df1d117a5d817cc8087c
> -- 
> 2.34.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-mafh5-gnomad-v3-1-2-grch38.
>
>
>
>
> Date: 
>
> Fri, 13 Oct 2023 14:49:42 +0200
>
>
>
>
> User-agent: 
>
> mu4e 1.10.7; emacs 29.1
>
>
>
>
> Applied after moving to annotation section.
>
> Thank you!
>
> -- 
> Ricardo
>
>
> --- End Message ---