bug#69729: closed ([PATCH 00/41] Improve performance in lapack dependent packages.)

[GNU bug Tracking System]

Your message dated Thu, 04 Apr 2024 17:17:19 +0200
with message-id <87plv5taww.fsf@gnu.org>
and subject line Re: [bug#69729] [PATCH 00/41] Improve performance in lapack 
dependent packages.
has caused the debbugs.gnu.org bug report #69729,
regarding [PATCH 00/41] Improve performance in lapack dependent packages.
to be marked as done.

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-- 
69729: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=69729
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH 00/41] Improve performance in lapack dependent packages.
>
>
>
>
> Date: 
>
> Mon, 11 Mar 2024 12:01:55 +0100
>
>
>
>
> This patch series aims at improving the performance of several packages by 
> changing the LAPACK library they depend on.
>
> The package `lapack` is the reference implementation from netlib.org of a 
> numerical linear algebra library, written in FORTRAN.
>
> The package `openblas` is a optimized implementation of the LAPACK and BLAS 
> APIs.
>
> Among the modified packages affected by the change, the following don't build:
>  * shogun: atlas dependency doesn't build (pre-existing error)
>  * lush2: preexisting error
>  * proteinortho: preexisting error (tests 2 and 3 fail)
>  * superlu-dist: dependency failure (combinatorial-blas)
>
>
> Also, the following packages have not been modified as it breaks the package:
>  * xyce-serial
>  * xyce-parallel
>  * gnss-sdr
>  * julia
>
> Romain GARBAGE (41):
>   gnu: arpack-ng: Switch to openblas.
>   gnu: armadillo: Switch to openblas.
>   gnu: octave-cli: Switch to openblas.
>   gnu: scalapack: Switch to openblas.
>   gnu: hypre: Switch to openblas.
>   gnu: igraph: Switch to openblas.
>   gnu: vosk-api: Remove dependency on lapack.
>   gnu: jags: Switch to openblas.
>   gnu: sbcl-lla: Switch to openblas.
>   gnu: itpp: Switch to openblas.
>   gnu: gmsh: Switch to openblas.
>   gnu: ghc-hmatrix: Switch to openblas.
>   gnu: fenics-dolfin: Remove dependency on lapack.
>   gnu: ipopt: Switch to openblas.
>   gnu: ceres: Remove dependency on lapack.
>   gnu: sundials-julia: Switch to openblas.
>   gnu: plink: Switch to openblas.
>   gnu: p4est: Remove dependency on lapack.
>   gnu: plink-ng: Remove lapack dep.
>   gnu: dealii: Remove dependency on lapack.
>   gnu: elemental: Remove dependency on lapack.
>   gnu: superlu-dist: Remove dependency on lapack.
>   gnu: bonmin: Switch to openblas.
>   gnu: mpb: Switch to openblas.
>   gnu: meep: Switch to openblas.
>   gnu: casacore: Remove dependency on lapack.
>   gnu: aoflagger: Remove dependency on lapack.
>   gnu: apl: Switch to openblas.
>   gnu: eigensoft: Remove dependency on lapack.
>   gnu: proteinortho: Remove dependency on lapack.
>   gnu: scilab: Remove dependency on lapack.
>   gnu: python-cvxopt: Remove dependency on lapack.
>   gnu: dlib: Remove dependency on lapack.
>   gnu: grass: Remove dependency on lapack.
>   gnu: harminv: Switch to openblas.
>   gnu: giac: Switch to openblas.
>   gnu: libflame: Switch to openblas.
>   gnu: lush2: Remove dependency on lapack.
>   gnu: shogun: Switch to openblas.
>   gnu: kaldi-for-vosk: Remove dependency on lapack.
>   gnu: ocaml-lacaml: Remove dependency on lapack.
>
>  gnu/packages/algebra.scm          |  2 +-
>  gnu/packages/apl.scm              |  2 +-
>  gnu/packages/astronomy.scm        |  2 --
>  gnu/packages/bioinformatics.scm   | 17 ++++++------
>  gnu/packages/engineering.scm      |  6 ++--
>  gnu/packages/geo.scm              |  6 +++-
>  gnu/packages/graph.scm            |  2 +-
>  gnu/packages/haskell-xyz.scm      |  9 ++----
>  gnu/packages/lisp-xyz.scm         |  6 ++--
>  gnu/packages/lisp.scm             |  1 -
>  gnu/packages/machine-learning.scm | 15 ++++------
>  gnu/packages/maths.scm            | 46 ++++++++++++++-----------------
>  gnu/packages/ocaml.scm            |  9 ++++--
>  gnu/packages/simulation.scm       |  3 +-
>  gnu/packages/statistics.scm       |  6 +++-
>  15 files changed, 65 insertions(+), 67 deletions(-)
>
> -- 
> 2.41.0
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> Re: [bug#69729] [PATCH 00/41] Improve performance in lapack dependent packages.
>
>
>
>
> Date: 
>
> Thu, 04 Apr 2024 17:17:19 +0200
>
>
>
>
> User-agent: 
>
> Gnus/5.13 (Gnus v5.13)
>
>
>
>
> Hello,
>
> Romain GARBAGE <romain.garbage@inria.fr> skribis:
>
> >   gnu: arpack-ng: Switch to openblas.
> >   gnu: armadillo: Switch to openblas.
> >   gnu: octave-cli: Switch to openblas.
> >   gnu: scalapack: Switch to openblas.
> >   gnu: hypre: Switch to openblas.
> >   gnu: igraph: Switch to openblas.
> >   gnu: vosk-api: Remove dependency on lapack.
> >   gnu: jags: Switch to openblas.
> >   gnu: sbcl-lla: Switch to openblas.
> >   gnu: itpp: Switch to openblas.
> >   gnu: gmsh: Switch to openblas.
> >   gnu: ghc-hmatrix: Switch to openblas.
> >   gnu: fenics-dolfin: Remove dependency on lapack.
> >   gnu: ipopt: Switch to openblas.
> >   gnu: ceres: Remove dependency on lapack.
> >   gnu: sundials-julia: Switch to openblas.
> >   gnu: plink: Switch to openblas.
> >   gnu: p4est: Remove dependency on lapack.
> >   gnu: plink-ng: Remove lapack dep.
> >   gnu: dealii: Remove dependency on lapack.
> >   gnu: elemental: Remove dependency on lapack.
> >   gnu: superlu-dist: Remove dependency on lapack.
> >   gnu: bonmin: Switch to openblas.
> >   gnu: mpb: Switch to openblas.
> >   gnu: meep: Switch to openblas.
> >   gnu: casacore: Remove dependency on lapack.
> >   gnu: aoflagger: Remove dependency on lapack.
> >   gnu: apl: Switch to openblas.
> >   gnu: eigensoft: Remove dependency on lapack.
> >   gnu: proteinortho: Remove dependency on lapack.
> >   gnu: scilab: Remove dependency on lapack.
> >   gnu: python-cvxopt: Remove dependency on lapack.
> >   gnu: dlib: Remove dependency on lapack.
> >   gnu: grass: Remove dependency on lapack.
> >   gnu: harminv: Switch to openblas.
> >   gnu: giac: Switch to openblas.
> >   gnu: libflame: Switch to openblas.
> >   gnu: lush2: Remove dependency on lapack.
> >   gnu: shogun: Switch to openblas.
> >   gnu: kaldi-for-vosk: Remove dependency on lapack.
> >   gnu: ocaml-lacaml: Remove dependency on lapack.
>
> Pushed as e6df74d2b1afb71121228330fce9b5020d00220a.
>
> Thanks!
>
> Ludo’.
>
>
> --- End Message ---