[ff3d-cvs] changes and CVSROOT problem

[Stephane Del Pino]

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Merry Christmas,
Since CVSROOT is not writable I do this by hand waiting this to be fixed...

Changes are quite a lot.
- - as usual, fixes
- - code design and flexibility improvements,
- - doxygenization for some files,
and the big one:
- - P1 finite element implementation is over! It seems that Santa is also 
involved in ff3d ;-)
I will send a short mail on ff3d-user and ff3d-dev explaining how to use it. 
Characteristics method is still to implement for that particular element and 
then Navier-Stokes will be possible.

As long as CVSROOT will not be writable developers are encourage to post 
abstract of there changes by hand ...

Stephane.

List of modified and added files.
=================================
In directory graphics:
            * Modified                graphics/VTKDriver.cpp
In directory language:
            * Modified                language/BoundaryExpression.cpp
            * Modified                language/BoundaryExpression.hpp
            * Modified                language/FunctionExpression.cpp
            * Modified                language/MeshExpression.cpp
            * Modified                language/RealExpression.cpp
            * Modified                language/parse.ff.yy
In directory solver:
            * Modified                solver/BaseFEMDiscretization.hpp
            * Modified                solver/Boundary.hpp
            * Added                   solver/
BoundaryConditionCommonFEMDiscretization.hpp
            * Modified                solver/
BoundaryConditionDiscretizationElimination.hpp
            * Modified                solver/
BoundaryConditionDiscretizationFEM.hpp
            * Modified                solver/
BoundaryConditionDiscretizationPenalty.hpp
            * Modified                solver/
BoundaryConditionFDMDiscretization.hpp
            * Modified                solver/
BoundaryConditionSurfaceMeshAssociation.hpp
            * Added                   solver/BoundaryMeshAssociation.hpp
            * Added                   solver/BoundaryReferences.hpp
            * Removed                 solver/BoundaryStructured3DMesh.hpp
            * Modified                solver/Cell.hpp
            * Modified                solver/ConformTransformation.cpp
            * Modified                solver/ConformTransformation.hpp
            * Modified                solver/ConnectivityBuilder.hpp
            * Modified                solver/ElementaryMatrixSet.cpp
            * Modified                solver/EliminatedFictitiousDomain.cpp
            * Modified                solver/FEMDiscretization.hpp
            * Modified                solver/FictitiousDomainMethod.cpp
            * Modified                solver/FiniteElementMethod.cpp
            * Modified                solver/FiniteElementTraits.hpp
            * Modified                solver/Hexahedron.cpp
            * Modified                solver/Hexahedron.hpp
            * Added                   solver/LagrangianFiniteElement.hpp
            * Modified                solver/Makefile.am
            * Modified                solver/Mesh.hpp
            * Modified                solver/MeshExtractor.hpp
            * Modified                solver/MeshOfHexahedra.hpp
            * Modified                solver/MeshOfTetrahedra.cpp
            * Modified                solver/MeshOfTetrahedra.hpp
            * Modified                solver/MeshReader.cpp
            * Modified                solver/MeshReader.hpp
            * Modified                solver/MeshSimplifier.cpp
            * Modified                solver/MeshTetrahedrizor.cpp
            * Modified                solver/MeshWriter.cpp
            * Added                   solver/P1FiniteElement.cpp
            * Added                   solver/P1FiniteElement.hpp
            * Modified                solver/PenalizedFictitousDomain.cpp
            * Modified                solver/Q1FiniteElement.cpp
            * Modified                solver/Q1FiniteElement.hpp
            * Modified                solver/Quadrangle.hpp
            * Modified                solver/QuadratureFormula.cpp
            * Modified                solver/QuadratureFormula.hpp
            * Modified                solver/Structured3DMesh.cpp
            * Modified                solver/Structured3DMesh.hpp
            * Modified                solver/SurfaceMesh.hpp
            * Modified                solver/SurfaceMeshGenerator.cpp
            * Modified                solver/SurfaceMeshGenerator.hpp
            * Modified                solver/SurfaceMeshOfQuadrangles.hpp
            * Modified                solver/SurfaceMeshOfTriangles.hpp
            * Modified                solver/Tetrahedron.cpp
            * Modified                solver/Tetrahedron.hpp
            * Modified                solver/Triangle.hpp
In directory utils:
            * Modified                utils/StaticCenter.cpp
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