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16/21: gnu: Add bpp-popgen.
From: |
Ben Woodcroft |
Subject: |
16/21: gnu: Add bpp-popgen. |
Date: |
Mon, 8 Aug 2016 12:09:00 +0000 (UTC) |
benwoodcroft pushed a commit to branch master
in repository guix.
commit 159a70167883b0b4d5237b7ef3493b54356f362e
Author: Ben Woodcroft <address@hidden>
Date: Tue Jul 12 16:02:45 2016 +1000
gnu: Add bpp-popgen.
* gnu/packages/bioinformatics.scm (bpp-popgen): New variable.
---
gnu/packages/bioinformatics.scm | 33 +++++++++++++++++++++++++++++++++
1 file changed, 33 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0b8424a..7834733 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -592,6 +592,39 @@ analysis, phylogenetics, molecular evolution and
population genetics. This
library provides phylogenetics-related modules.")
(license license:cecill-c))))
+(define-public bpp-popgen
+ ;; The last release was in 2014 and the recommended way to install from
source
+ ;; is to clone the git repository, so we do this.
+ ;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
+ (let ((commit "e472bac9b1a148803895d747cd6d0c5904f85d9f"))
+ (package
+ (name "bpp-popgen")
+ (version (string-append "2.2.0-1." (string-take commit 7)))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "http://biopp.univ-montp2.fr/git/bpp-popgen")
+ (commit commit)))
+ (file-name (string-append name "-" version "-checkout"))
+ (sha256
+ (base32
+ "0yn82dzn1n5629nzja68xfrhi655709rjanyryb36vzkmymy6dw5"))))
+ (build-system cmake-build-system)
+ (arguments
+ `(#:parallel-build? #f
+ #:tests? #f)) ; There are no tests.
+ (inputs
+ `(("bpp-core" ,bpp-core)
+ ("bpp-seq" ,bpp-seq)
+ ("gcc" ,gcc-5)))
+ (home-page "http://biopp.univ-montp2.fr")
+ (synopsis "Bio++ population genetics library")
+ (description
+ "Bio++ is a set of C++ libraries for Bioinformatics, including sequence
+analysis, phylogenetics, molecular evolution and population genetics. This
+library provides population genetics-related modules.")
+ (license license:cecill-c))))
+
(define-public bpp-seq
;; The last release was in 2014 and the recommended way to install from
source
;; is to clone the git repository, so we do this.
- 04/21: gnu: Add perl-graph., (continued)
- 04/21: gnu: Add perl-graph., Ben Woodcroft, 2016/08/08
- 07/21: gnu: Add perl-file-path., Ben Woodcroft, 2016/08/08
- 06/21: gnu: Add perl-file-slurper., Ben Woodcroft, 2016/08/08
- 02/21: gnu: Add perl-xml-writer., Ben Woodcroft, 2016/08/08
- 17/21: gnu: Add bppsuite., Ben Woodcroft, 2016/08/08
- 05/21: gnu: Add perl-graph-readwrite., Ben Woodcroft, 2016/08/08
- 12/21: gnu: Add mcl., Ben Woodcroft, 2016/08/08
- 15/21: gnu: Add bpp-phyl., Ben Woodcroft, 2016/08/08
- 20/21: gnu: Add raxml., Ben Woodcroft, 2016/08/08
- 21/21: gnu: Add roary., Ben Woodcroft, 2016/08/08
- 16/21: gnu: Add bpp-popgen.,
Ben Woodcroft <=
- 08/21: gnu: Add perl-file-grep., Ben Woodcroft, 2016/08/08
- 18/21: gnu: Add exonerate., Ben Woodcroft, 2016/08/08
- 01/21: gnu: parallel: Use full paths for executables., Ben Woodcroft, 2016/08/08
- 09/21: gnu: Add perl-array-utils., Ben Woodcroft, 2016/08/08
- 10/21: gnu: Add perl-test-files., Ben Woodcroft, 2016/08/08
- 11/21: gnu: Add perl-env-path., Ben Woodcroft, 2016/08/08
- 13/21: gnu: Add bpp-core., Ben Woodcroft, 2016/08/08
- 14/21: gnu: Add bpp-seq., Ben Woodcroft, 2016/08/08
- 19/21: gnu: Add prank., Ben Woodcroft, 2016/08/08