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08/16: gnu: r-seurat: Fix ModularityOptimizer.jar.
From: |
Ricardo Wurmus |
Subject: |
08/16: gnu: r-seurat: Fix ModularityOptimizer.jar. |
Date: |
Mon, 18 Dec 2017 06:02:18 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 8271b8d22a84ded6bfd2a81531116d00347c653c
Author: Ricardo Wurmus <address@hidden>
Date: Mon Dec 18 11:56:12 2017 +0100
gnu: r-seurat: Fix ModularityOptimizer.jar.
* gnu/packages/bioinformatics.scm (r-seurat)[arguments]: Include Main-Class
attribute in manifest.
---
gnu/packages/bioinformatics.scm | 16 +++++++++++-----
1 file changed, 11 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 58421d3..99693bd 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9427,11 +9427,17 @@ and irregular enzymatic cleavages, mass measurement
accuracy, etc.")
(let ((classesdir "tmp-classes"))
(setenv "JAVA_HOME" (assoc-ref inputs "jdk"))
(mkdir classesdir)
- (and (zero? (apply system* `("javac" "-d" ,classesdir
- ,@(find-files "java"
"\\.java$"))))
- (zero? (system* "jar"
- "-cf" "inst/java/ModularityOptimizer.jar"
- "-C" classesdir ".")))))))))
+
+ (with-output-to-file "manifest"
+ (lambda _
+ (display "Manifest-Version: 1.0
+Main-Class: ModularityOptimizer\n")))
+ (and (zero? (apply system* `("javac" "-d" ,classesdir
+ ,@(find-files "java" "\\.java$"))))
+ (zero? (system* "jar"
+ "-cmf" "manifest"
+ "inst/java/ModularityOptimizer.jar"
+ "-C" classesdir ".")))))))))
(native-inputs
`(("jdk" ,icedtea "jdk")))
(propagated-inputs
- branch master updated (5a5d1a7 -> f1a2b1c), Ricardo Wurmus, 2017/12/18
- 03/16: gnu: Add qjackrcd., Ricardo Wurmus, 2017/12/18
- 10/16: gnu: Add r-dtw., Ricardo Wurmus, 2017/12/18
- 11/16: gnu: Add r-sdmtools., Ricardo Wurmus, 2017/12/18
- 02/16: gnu: Add whysynth., Ricardo Wurmus, 2017/12/18
- 09/16: gnu: Add r-ica., Ricardo Wurmus, 2017/12/18
- 05/16: gnu: Add aj-snapshot., Ricardo Wurmus, 2017/12/18
- 15/16: gnu: Add r-diffusionmap., Ricardo Wurmus, 2017/12/18
- 08/16: gnu: r-seurat: Fix ModularityOptimizer.jar.,
Ricardo Wurmus <=
- 01/16: gnu: Add sonivox-eas., Ricardo Wurmus, 2017/12/18
- 04/16: gnu: Add jack-capture., Ricardo Wurmus, 2017/12/18
- 13/16: gnu: Add r-ggridges., Ricardo Wurmus, 2017/12/18
- 12/16: gnu: Add r-scatterplot3d., Ricardo Wurmus, 2017/12/18
- 06/16: gnu: Add noise-repellent., Ricardo Wurmus, 2017/12/18
- 07/16: gnu: qmidiarp: Update to 0.6.5., Ricardo Wurmus, 2017/12/18
- 14/16: gnu: Add r-ggjoy., Ricardo Wurmus, 2017/12/18
- 16/16: gnu: r-seurat: Update to 2.1.0., Ricardo Wurmus, 2017/12/18