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13/16: gnu: Add python-pyfaidx.
From: |
Ricardo Wurmus |
Subject: |
13/16: gnu: Add python-pyfaidx. |
Date: |
Mon, 10 Sep 2018 10:51:24 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 80f4db91b17ff5d82260c9194ec09a408f854455
Author: Ricardo Wurmus <address@hidden>
Date: Wed Sep 5 16:00:03 2018 +0200
gnu: Add python-pyfaidx.
* gnu/packages/bioinformatics.scm (python-pyfaidx): New variable.
---
gnu/packages/bioinformatics.scm | 22 ++++++++++++++++++++++
1 file changed, 22 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9b047c2..d66d9ef 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13556,3 +13556,25 @@ bound.")
"Pypairix is a Python module for fast querying on a pairix-indexed
bgzipped text file that contains a pair of genomic coordinates per line.")
(license license:expat)))
+
+(define-public python-pyfaidx
+ (package
+ (name "python-pyfaidx")
+ (version "0.5.4.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "pyfaidx" version))
+ (sha256
+ (base32
+ "0y5zyjksj1rdglj601xd2bbni5abhdh622y3ck76chyzxz9z4rx8"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ `(("python-setuptools" ,python-setuptools)
+ ("python-six" ,python-six)))
+ (home-page "http://mattshirley.com")
+ (synopsis "Random access to fasta subsequences")
+ (description
+ "This package provides procedures for efficient pythonic random access to
+fasta subsequences.")
+ (license license:bsd-3)))
- branch master updated (82d5c7c -> 5bfa751), Ricardo Wurmus, 2018/09/10
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