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11/14: gnu: snap-aligner: Fetch sources from git.
From: |
Ricardo Wurmus |
Subject: |
11/14: gnu: snap-aligner: Fetch sources from git. |
Date: |
Wed, 7 Nov 2018 17:17:49 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit e0a8fc85dd1ee9e9ceef790b311691068a664a28
Author: Ricardo Wurmus <address@hidden>
Date: Wed Nov 7 23:06:28 2018 +0100
gnu: snap-aligner: Fetch sources from git.
* gnu/packages/bioinformatics.scm (snap-aligner)[source]: Fetch from git.
[arguments]: Use INVOKE.
---
gnu/packages/bioinformatics.scm | 14 +++++++-------
1 file changed, 7 insertions(+), 7 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a571d72..3d230a1 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5906,20 +5906,20 @@ optionally compressed by gzip.")
(name "snap-aligner")
(version "1.0beta.18")
(source (origin
- (method url-fetch)
- (uri (string-append
- "https://github.com/amplab/snap/archive/v"
- version ".tar.gz"))
- (file-name (string-append name "-" version ".tar.gz"))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/amplab/snap.git")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
(sha256
(base32
- "1vnsjwv007k1fl1q7d681kbwn6bc66cgw6h16hym6gvyy71qv2ly"))))
+ "01w3qq4wm07z73vky0cfwlmrbf50n3w722cxrlzxfi99mnb808d8"))))
(build-system gnu-build-system)
(arguments
'(#:phases
(modify-phases %standard-phases
(delete 'configure)
- (replace 'check (lambda _ (zero? (system* "./unit_tests"))))
+ (replace 'check (lambda _ (invoke "./unit_tests") #t))
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
- 03/14: gnu: python2-biom-format: Fix build., (continued)
- 03/14: gnu: python2-biom-format: Fix build., Ricardo Wurmus, 2018/11/07
- 06/14: gnu: seqtk: Update to 1.3., Ricardo Wurmus, 2018/11/07
- 14/14: gnu: filevercmp: Fetch sources from git., Ricardo Wurmus, 2018/11/07
- 07/14: gnu: preseq: Fetch sources from git., Ricardo Wurmus, 2018/11/07
- 13/14: gnu: ritornello: Update to 2.0.1., Ricardo Wurmus, 2018/11/07
- 05/14: gnu: seqtk: Fetch sources from git., Ricardo Wurmus, 2018/11/07
- 08/14: gnu: preseq: Update to 2.0.3., Ricardo Wurmus, 2018/11/07
- 10/14: gnu: sortmerna: Fetch sources from git., Ricardo Wurmus, 2018/11/07
- 09/14: gnu: vsearch: Fetch source from git., Ricardo Wurmus, 2018/11/07
- 02/14: gnu: raxml: Fetch sources from git., Ricardo Wurmus, 2018/11/07
- 11/14: gnu: snap-aligner: Fetch sources from git.,
Ricardo Wurmus <=
- 12/14: gnu: ritornello: Fetch sources from git., Ricardo Wurmus, 2018/11/07