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17/18: gnu: Add r-ddrtree.
From: |
guix-commits |
Subject: |
17/18: gnu: Add r-ddrtree. |
Date: |
Mon, 7 Jan 2019 12:44:16 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit e3bb076678aa25b5394b4d35c38aaa3607065082
Author: Ricardo Wurmus <address@hidden>
Date: Mon Jan 7 16:40:37 2019 +0100
gnu: Add r-ddrtree.
* gnu/packages/cran.scm (r-ddrtree): New variable.
---
gnu/packages/cran.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index b1a23b9..02fe328 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -8821,3 +8821,34 @@ package for using sparse matrices. Some of the
functions are very general,
while other are highly specific for the special data format used for
@dfn{quantitative language comparison} (QLC).")
(license license:gpl3)))
+
+(define-public r-ddrtree
+ (package
+ (name "r-ddrtree")
+ (version "0.1.5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "DDRTree" version))
+ (sha256
+ (base32
+ "16s5fjw7kwlxhrkzdny62sx32fvmg3rxjc3wrh6krd31jh1fqlfk"))))
+ (properties `((upstream-name . "DDRTree")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-bh" ,r-bh)
+ ("r-irlba" ,r-irlba)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rcppeigen" ,r-rcppeigen)))
+ (home-page "https://cran.r-project.org/web/packages/DDRTree")
+ (synopsis "Learning principal graphs with DDRTree")
+ (description
+ "This package provides an implementation of the framework of
address@hidden graph embedding} (RGE) which projects data into a reduced
+dimensional space while constructs a principal tree which passes through the
+middle of the data simultaneously. DDRTree shows superiority to
+alternatives (Wishbone, DPT) for inferring the ordering as well as the
+intrinsic structure of single cell genomics data. In general, it could be
+used to reconstruct the temporal progression as well as the bifurcation
+structure of any data type.")
+ (license license:asl2.0)))
- branch master updated (dcd1aa2 -> d53b231), guix-commits, 2019/01/07
- 18/18: gnu: Add r-corpcor., guix-commits, 2019/01/07
- 16/18: gnu: Add r-qlcmatrix., guix-commits, 2019/01/07
- 17/18: gnu: Add r-ddrtree.,
guix-commits <=
- 14/18: gnu: Add r-densityclust., guix-commits, 2019/01/07
- 13/18: gnu: Add r-sparsesvd., guix-commits, 2019/01/07
- 11/18: gnu: Add r-rvcheck., guix-commits, 2019/01/07
- 04/18: gnu: Add r-softimpute., guix-commits, 2019/01/07
- 09/18: gnu: Add r-colorramps., guix-commits, 2019/01/07
- 02/18: gnu: Add r-gsl., guix-commits, 2019/01/07
- 01/18: gnu: Add r-stabledist., guix-commits, 2019/01/07
- 05/18: gnu: Add r-fftwtools., guix-commits, 2019/01/07
- 06/18: gnu: Add r-tiff., guix-commits, 2019/01/07
- 12/18: gnu: Add r-docopt., guix-commits, 2019/01/07