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125/128: gnu: Add r-plgem.
From: |
guix-commits |
Subject: |
125/128: gnu: Add r-plgem. |
Date: |
Sat, 12 Jan 2019 17:36:24 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit cad6fb2dec67e41498ee4cf9026ea5d12d8050e6
Author: Ricardo Wurmus <address@hidden>
Date: Sat Jan 12 23:07:29 2019 +0100
gnu: Add r-plgem.
* gnu/packages/bioconductor.scm (r-plgem): New variable.
---
gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 06dc2580..0ded2a7 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -852,6 +852,31 @@ information.")
in omics data.")
(license license:gpl2+)))
+(define-public r-plgem
+ (package
+ (name "r-plgem")
+ (version "1.54.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "plgem" version))
+ (sha256
+ (base32
+ "1330635db3p8xm5y8fwrk1l37r6bgypsq70s3rx954i775zp6szg"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-mass" ,r-mass)))
+ (home-page "http://www.genopolis.it")
+ (synopsis "Detect differential expression in microarray and proteomics
datasets")
+ (description
+ "The Power Law Global Error Model (PLGEM) has been shown to faithfully
+model the variance-versus-mean dependence that exists in a variety of
+genome-wide datasets, including microarray and proteomics data. The use of
+PLGEM has been shown to improve the detection of differentially expressed
+genes or proteins in these datasets.")
+ (license license:gpl2)))
+
(define-public r-inspect
(package
(name "r-inspect")
- 82/128: gnu: r-seqminer: Update to 7.1., (continued)
- 82/128: gnu: r-seqminer: Update to 7.1., guix-commits, 2019/01/12
- 87/128: gnu: r-deseq2: Update to 1.22.2., guix-commits, 2019/01/12
- 100/128: gnu: r-copywriter: Update to 2.14.1., guix-commits, 2019/01/12
- 98/128: gnu: r-tximport: Update to 1.10.1., guix-commits, 2019/01/12
- 109/128: gnu: r-annotationhub: Update to 2.14.2., guix-commits, 2019/01/12
- 115/128: gnu: r-qvalue: Update to 2.14.1., guix-commits, 2019/01/12
- 123/128: gnu: r-glimma: Update to 1.10.1., guix-commits, 2019/01/12
- 128/128: gnu: r-ruvseq: Update to 1.16.1., guix-commits, 2019/01/12
- 90/128: gnu: r-systempiper: Update to 1.16.1., guix-commits, 2019/01/12
- 122/128: gnu: r-goseq: Update to 1.34.1., guix-commits, 2019/01/12
- 125/128: gnu: Add r-plgem.,
guix-commits <=