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04/04: gnu: r-ggbio: Fix build.
From: |
guix-commits |
Subject: |
04/04: gnu: r-ggbio: Fix build. |
Date: |
Sat, 27 Apr 2019 14:45:30 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit fc3ebc3023f2c419ad07536de9211109c1bb2452
Author: Ricardo Wurmus <address@hidden>
Date: Sat Apr 27 20:44:43 2019 +0200
gnu: r-ggbio: Fix build.
* gnu/packages/bioinformatics.scm (r-ggbio)[arguments]: Add build phase to
patch out typo.
---
gnu/packages/bioinformatics.scm | 10 ++++++++++
1 file changed, 10 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4891bb1..78d6fe8 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9953,6 +9953,16 @@ effort and encourages consistency.")
(base32
"0wq49qqzkcn8s19xgaxf2s1j1a563d7pbhhvris6fhxfdjsz4934"))))
(build-system r-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ ;; See https://github.com/tengfei/ggbio/issues/117
+ ;; This fix will be included in the next release.
+ (add-after 'unpack 'fix-typo
+ (lambda _
+ (substitute* "R/GGbio-class.R"
+ (("fechable") "fetchable"))
+ #t)))))
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-annotationfilter" ,r-annotationfilter)