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33/47: gnu: Add r-ace2fastq.
From: |
guix-commits |
Subject: |
33/47: gnu: Add r-ace2fastq. |
Date: |
Fri, 13 Dec 2019 16:42:20 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit b441dac7af3f6fbf8b0a7def117abc0181b52f33
Author: Ricardo Wurmus <address@hidden>
Date: Fri Dec 13 18:51:11 2019 +0100
gnu: Add r-ace2fastq.
* gnu/packages/cran.scm (r-ace2fastq): New variable.
---
gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 5c530a6..4b4d199 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -16860,3 +16860,29 @@ Functions for performing cross validation are also
supplied along with basic
prediction and plotting functions. @dfn{Sparse zero variance
discriminant} (SZVD) analysis is also included in the package.")
(license license:gpl2+)))
+
+(define-public r-ace2fastq
+ (package
+ (name "r-ace2fastq")
+ (version "0.6.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "ace2fastq" version))
+ (sha256
+ (base32
+ "09kk3yyqnr2xp820g0p3aai9a21figigjr9lxkr3zjq2d8gzwfic"))))
+ (properties `((upstream-name . "ace2fastq")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-stringr" ,r-stringr)))
+ (home-page "https://github.com/c5sire/ace2fastq")
+ (synopsis "ACE file to FASTQ converter")
+ (description
+ "The ACE file format is used in genomics to store contigs from sequencing
+machines. This tools converts it into FASTQ format. Both formats contain the
+sequence characters and their corresponding quality information. Unlike the
+FASTQ file, the ACE file stores the quality values numerically. The
+conversion algorithm uses the standard Sanger formula. The package
+facilitates insertion into pipelines, and content inspection.")
+ (license license:gpl3)))
- 11/47: gnu: Add r-rglpk., (continued)
- 11/47: gnu: Add r-rglpk., guix-commits, 2019/12/13
- 19/47: gnu: Add r-emojifont., guix-commits, 2019/12/13
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- 13/47: gnu: Add r-abcrlda., guix-commits, 2019/12/13
- 17/47: gnu: Add r-showtextdb., guix-commits, 2019/12/13
- 33/47: gnu: Add r-ace2fastq.,
guix-commits <=
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- 18/47: gnu: Add r-showtext., guix-commits, 2019/12/13
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- 39/47: gnu: Add r-acfmperiod., guix-commits, 2019/12/13
- 44/47: gnu: Add r-filematrix., guix-commits, 2019/12/13
- 45/47: gnu: Add r-acmeeqtl., guix-commits, 2019/12/13
- 46/47: gnu: Add r-acmer., guix-commits, 2019/12/13
- 47/47: gnu: Add r-r-huge., guix-commits, 2019/12/13