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branch master updated: gnu: Add r-pasilla.
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guix-commits |
Subject: |
branch master updated: gnu: Add r-pasilla. |
Date: |
Sun, 26 Apr 2020 15:02:29 -0400 |
This is an automated email from the git hooks/post-receive script.
roelj pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new ec20858 gnu: Add r-pasilla.
ec20858 is described below
commit ec20858a6a9453af1d9bcf3b6efe564f352af2a7
Author: Roel Janssen <address@hidden>
AuthorDate: Sun Apr 26 21:02:00 2020 +0200
gnu: Add r-pasilla.
* gnu/packages/bioconductor.scm (r-pasilla): New variable.
---
gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 68d8e5b..2d76637 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -811,6 +811,32 @@ performing parallel computations on multicore machines.")
Disease Ontology.")
(license license:artistic2.0)))
+(define-public r-pasilla
+ (package
+ (name "r-pasilla")
+ (version "1.14.0")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "http://bioconductor.org/packages/release/data/experiment"
+ "/src/contrib/pasilla_" version ".tar.gz"))
+ (sha256
+ (base32
+ "0h124i2fb2lbj2k48zzf1n7ldqa471bs26fbd9vw50299aqx28x0"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocstyle" ,r-biocstyle)
+ ("r-dexseq" ,r-dexseq)
+ ("r-knitr" ,r-knitr)
+ ("r-rmarkdown" ,r-rmarkdown)))
+ (home-page "https://www.bioconductor.org/packages/pasilla/")
+ (synopsis "Data package with per-exon and per-gene read counts")
+ (description "This package provides per-exon and per-gene read counts
+computed for selected genes from RNA-seq data that were presented in the
+article 'Conservation of an RNA regulatory map between Drosophila and mammals'
+by Brooks et al., Genome Research 2011.")
+ (license license:lgpl2.1+)))
+
(define-public r-pfam-db
(package
(name "r-pfam-db")
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