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branch master updated: gnu: Add r-bsgenome-hsapiens-ucsc-hg38.
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guix-commits |
Subject: |
branch master updated: gnu: Add r-bsgenome-hsapiens-ucsc-hg38. |
Date: |
Mon, 27 Apr 2020 04:44:09 -0400 |
This is an automated email from the git hooks/post-receive script.
roelj pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new 8ce240f gnu: Add r-bsgenome-hsapiens-ucsc-hg38.
8ce240f is described below
commit 8ce240fdbf05539b0d13f981b0520be5d84e0e61
Author: Roel Janssen <address@hidden>
AuthorDate: Mon Apr 27 10:43:51 2020 +0200
gnu: Add r-bsgenome-hsapiens-ucsc-hg38.
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): New
variable.
---
gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index d74d1cf..66ff611 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -493,6 +493,30 @@ annotations for the genome of the model mouse Mus
musculus.")
by UCSC (hg19, February 2009) and stored in Biostrings objects.")
(license license:artistic2.0)))
+(define-public r-bsgenome-hsapiens-ucsc-hg38
+ (package
+ (name "r-bsgenome-hsapiens-ucsc-hg38")
+ (version "1.4.1")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BSgenome.Hsapiens.UCSC.hg38"
+ version 'annotation))
+ (sha256
+ (base32
+ "1ql08pvi4vv0ynvg4qs9kysw1c7s3crkgin6zxvgzqk6fray9mvi"))))
+ (properties
+ `((upstream-name . "BSgenome.Hsapiens.UCSC.hg38")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-bsgenome" ,r-bsgenome)))
+ (home-page
+ "https://www.bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg38/")
+ (synopsis "Full genome sequences for Homo sapiens")
+ (description
+ "This package provides full genome sequences for Homo sapiens (Human)
+as provided by UCSC (hg38, Dec. 2013) and stored in Biostrings objects.")
+ (license license:artistic2.0)))
+
(define-public r-ensdb-hsapiens-v75
(package
(name "r-ensdb-hsapiens-v75")
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