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branch master updated (db6290a -> 9ae4bd0)
From: |
guix-commits |
Subject: |
branch master updated (db6290a -> 9ae4bd0) |
Date: |
Fri, 12 Jun 2020 19:29:18 -0400 (EDT) |
rekado pushed a change to branch master
in repository guix.
from db6290a lint: check-patch-file-names: Use origin-actual-file-name.
new a620d22 gnu: r-gprofiler: Move to (gnu packages cran).
new 8e518d4 guix: Update to Bioconductor 3.11.
new f9311ea gnu: node: Build shared library.
new 45f54b4 gnu: Add r-gprofiler2.
new e6aacef gnu: Add r-scatterpie.
new 06ceac3 gnu: Add r-v8.
new 67a289e gnu: Add r-dot.
new 2226a2a gnu: r-preprocesscore: Update to 1.50.0.
new c85e5ac gnu: r-rgraphviz: Update to 2.32.0.
new 5fdea05 gnu: r-genefilter: Update to 1.70.0.
new 3d7de4e gnu: r-deseq2: Update to 1.28.1.
new db5addb gnu: r-dexseq: Update to 1.34.0.
new 397568d gnu: r-annotationforge: Update to 1.30.1.
new 7d8b96e gnu: r-rbgl: Update to 1.64.0.
new a8613ff gnu: r-gseabase: Update to 1.50.1.
new be41428 gnu: r-category: Update to 2.54.0.
new 3d2899d gnu: r-gostats: Update to 2.54.0.
new 681cca9 gnu: r-shortread: Update to 1.46.0.
new bb18d11 gnu: r-systempiper: Update to 1.22.0.
new 5de96ae gnu: r-grohmm: Update to 1.22.0.
new 1ca88fb gnu: r-biocviews: Update to 1.56.0.
new 9f416be gnu: r-biocstyle: Update to 2.16.0.
new 1a9de6c gnu: r-bioccheck: Update to 1.24.0.
new f189f53 gnu: r-s4vectors: Update to 0.26.1.
new 8a38b67 gnu: r-iranges: Update to 2.22.2.
new 506735e gnu: r-genomeinfodb: Update to 1.24.0.
new c14d59d gnu: r-edger: Update to 3.30.3.
new cdd83b2 gnu: r-variantannotation: Update to 1.34.0.
new 49c766d gnu: r-limma: Update to 3.44.1.
new e0d40fa gnu: r-xvector: Update to 0.28.0.
new 087a97f gnu: r-genomicranges: Update to 1.40.0.
new 7d91e3b gnu: r-biobase: Update to 2.48.0.
new 9202247 gnu: r-annotationdbi: Update to 1.50.0.
new e87e6cc gnu: r-biomart: Update to 2.44.0.
new cb486f1 gnu: r-biocparallel: Update to 1.22.0.
new d3491d4 gnu: r-biostrings: Update to 2.56.0.
new 1f9c87a gnu: r-rsamtools: Update to 2.4.0.
new 46e103a gnu: r-delayedarray: Update to 0.14.0.
new 87c98cf gnu: r-summarizedexperiment: Update to 1.18.1.
new 58613ca gnu: r-genomicalignments: Update to 1.24.0.
new f85794e gnu: r-rtracklayer: Update to 1.48.0.
new a285314 gnu: r-genomicfeatures: Update to 1.40.0.
new 543fd63 gnu: r-topgo: Update to 2.40.0.
new d9b23ec gnu: r-bsgenome: Update to 1.56.0.
new e6df69a gnu: r-impute: Update to 1.62.0.
new 2d537b5 gnu: r-seqpattern: Update to 1.20.0.
new 837e763 gnu: r-genomation: Update to 1.20.0.
new 40ba4e8 gnu: r-seqlogo: Update to 1.54.3.
new 239ca0f gnu: r-motifrg: Update to 1.31.0.
new 52ce0d2 gnu: r-zlibbioc: Update to 1.34.0.
new 8f08457 gnu: r-rhtslib: Update to 1.20.0.
new 261d931 gnu: r-bamsignals: Update to 1.20.0.
new 3c53617 gnu: r-rcas: Update to 1.14.0.
new 40a4772 gnu: r-mutationalpatterns: Update to 2.0.0.
new 876e05b gnu: r-tximport: Update to 1.16.1.
new 05716c1 gnu: r-rhdf5: Update to 2.32.0.
new 43dec92 gnu: r-annotationfilter: Update to 1.12.0.
new 6a25fb9 gnu: r-chipseq: Update to 1.38.0.
new 3475ad0 gnu: r-copywriter: Update to 2.20.0.
new c336d54 gnu: r-methylkit: Update to 1.14.2.
new d95a1cb gnu: r-sva: Update to 3.36.0.
new 157eb89 gnu: r-protgenerics: Update to 1.20.0.
new d93af7d gnu: r-affyio: Update to 1.58.0.
new 736f6cf gnu: r-affy: Update to 1.66.0.
new 8e0d11d gnu: r-vsn: Update to 3.56.0.
new 8eb5798 gnu: r-mzid: Update to 1.26.0.
new 7b4fc6a gnu: r-pcamethods: Update to 1.80.0.
new 10a7ee2 gnu: r-msnbase: Update to 2.14.2.
new f6ddf20 gnu: r-msnid: Update to 1.22.0.
new 019bc36 gnu: r-aroma-light: Update to 3.18.0.
new c9059a3 gnu: r-deseq: Update to 1.39.0.
new 1599061 gnu: r-edaseq: Update to 2.22.0.
new 334e8d7 gnu: r-interactivedisplaybase: Update to 1.26.3.
new 5fce232 gnu: r-annotationhub: Update to 2.20.0.
new 3422533 gnu: r-fastseg: Update to 1.34.0.
new d80a6ca gnu: r-keggrest: Update to 1.28.0.
new 817e4c8 gnu: r-gage: Update to 2.37.0.
new 8323ff3 gnu: r-genomicfiles: Update to 1.24.0.
new ca5c92c gnu: r-complexheatmap: Update to 2.4.2.
new 7a9e7e4 gnu: r-dirichletmultinomial: Update to 1.30.0.
new 39da6fb gnu: r-ensembldb: Update to 2.12.1.
new 7c26687 gnu: r-organismdbi: Update to 1.30.0.
new 07518c3 gnu: r-biovizbase: Update to 1.36.0.
new 7038aeb gnu: r-ggbio: Update to 1.36.0.
new 42d8cd9 gnu: r-gqtlbase: Update to 1.20.0.
new aab0e28 gnu: r-snpstats: Update to 1.38.0.
new 87772ab gnu: r-erma: Update to 1.4.0.
new 6caad43 gnu: r-ldblock: Update to 1.18.0.
new a97897b gnu: r-gqtlstats: Update to 1.20.0.
new 522da60 gnu: r-gviz: Update to 1.32.0.
new ddef43a gnu: r-gwascat: Update to 2.20.1.
new a811751 gnu: r-sushi: Update to 1.26.0.
new 6be25cc gnu: r-fithic: Update to 1.14.0.
new 46f188d gnu: r-hitc: Update to 1.32.0.
new cf90768 gnu: r-hdf5array: Update to 1.16.0.
new 87d5444 gnu: r-rhdf5lib: Update to 1.10.0.
new 16dd6ba gnu: r-beachmat: Update to 2.4.0.
new 9e7acf2 gnu: r-singlecellexperiment: Update to 1.10.1.
new 7039b53 gnu: r-scater: Update to 1.16.1.
new 47c7670 gnu: r-scran: Update to 1.16.0.
new a3b5516 gnu: r-delayedmatrixstats: Update to 1.10.0.
new 725eea0 gnu: r-ideoviz: Update to 1.24.0.
new 751fa8f gnu: r-coverageview: Update to 1.26.0.
new 1ab0380 gnu: r-cummerbund: Update to 2.30.0.
new bc217e4 gnu: r-biocversion: Update to 3.11.1.
new 2e15c16 gnu: r-biocgenerics: Update to 0.34.0.
new 66aeb1b gnu: r-affycomp: Update to 1.64.0.
new 251c18f gnu: r-affycompatible: Update to 1.48.0.
new 36d4ca4 gnu: r-affycontam: Update to 1.46.0.
new fa61069 gnu: r-affycoretools: Update to 1.60.1.
new acaf8a2 gnu: r-affxparser: Update to 1.60.0.
new c2f4ad9 gnu: r-annotate: Update to 1.66.0.
new 07bea01 gnu: r-hpar: Update to 1.30.0.
new 7f34dd5 gnu: r-regioner: Update to 1.20.0.
new 7f94cf0 gnu: r-reportingtools: Update to 2.28.0.
new 53e4201 gnu: r-geneplotter: Update to 1.66.0.
new b628842 gnu: r-oligoclasses: Update to 1.50.0.
new ace82f8 gnu: r-oligo: Update to 1.52.0.
new f9a2475 gnu: r-qvalue: Update to 2.20.0.
new b47b649 gnu: r-diffbind: Update to 2.16.0.
new 8cadf25 gnu: r-multtest: Update to 2.44.0.
new 7d37c6d gnu: r-graph: Update to 1.66.0.
new dc24de4 gnu: r-chippeakanno: Update to 3.22.2.
new 49d589e gnu: r-marray: Update to 1.66.0.
new bd93ec4 gnu: r-cghbase: Update to 1.48.0.
new de4a352 gnu: r-cghcall: Update to 2.50.0.
new f4ef564 gnu: r-qdnaseq: Update to 1.24.0.
new 9834c36 gnu: r-bayseq: Update to 2.22.0.
new ef1d323 gnu: r-chipcomp: Update to 1.18.0.
new 7aae05a gnu: r-riboprofiling: Update to 1.18.0.
new 6b78a91 gnu: r-riboseqr: Update to 1.22.0.
new 861a903 gnu: r-interactionset: Update to 1.16.0.
new 76dd036 gnu: r-genomicinteractions: Update to 1.22.0.
new c7be592 gnu: r-ctc: Update to 1.62.0.
new 7fbd977 gnu: r-goseq: Update to 1.40.0.
new a6251d6 gnu: r-glimma: Update to 1.16.0.
new ee73dea gnu: r-rots: Update to 1.16.0.
new 46a973b gnu: r-plgem: Update to 1.60.0.
new 437bc4d gnu: r-inspect: Update to 1.18.0.
new 14f40ae gnu: r-dnabarcodes: Update to 1.18.0.
new ae0fcaa gnu: r-ruvseq: Update to 1.22.0.
new f5864c1 gnu: r-biocneighbors: Update to 1.6.0.
new a8351d4 gnu: r-biocsingular: Update to 1.4.0.
new 265b645 gnu: r-destiny: Update to 3.2.0.
new 784d167 gnu: r-savr: Update to 1.26.0.
new 9697afb gnu: r-chipexoqual: Update to 1.12.0.
new 866939b gnu: r-copynumber: Update to 1.28.0.
new 6a7cfd5 gnu: r-dnacopy: Update to 1.62.0.
new 1e37cac gnu: r-ebseq: Update to 1.28.0.
new 6e2dc9e gnu: r-karyoploter: Update to 1.14.0.
new 0653b8b gnu: r-lpsymphony: Update to 1.16.0.
new 359a084 gnu: r-ihw: Update to 1.16.0.
new ee1e8fe gnu: r-icobra: Update to 1.16.0.
new 97cba97 gnu: r-mast: Update to 1.14.0.
new d1f3c37 gnu: r-monocle: Update to 2.16.0.
new 22c084b gnu: r-noiseq: Update to 2.31.0.
new ce9e19b gnu: r-scdd: Update to 1.12.0.
new 3fc1e03 gnu: r-scone: Update to 1.12.0.
new 159e427 gnu: r-geoquery: Update to 2.56.0.
new d784a47 gnu: r-illuminaio: Update to 0.30.0.
new debaa0f gnu: r-siggenes: Update to 1.62.0.
new e3fbcb2 gnu: r-bumphunter: Update to 1.30.0.
new 83e6ffd gnu: r-minfi: Update to 1.34.0.
new 5f25d5f gnu: r-methylumi: Update to 2.34.0.
new ae1c51a gnu: r-lumi: Update to 2.40.0.
new 1465873 gnu: r-linnorm: Update to 2.12.0.
new 293fb8a gnu: r-ioniser: Update to 2.12.0.
new ecb4e16 gnu: r-triform: Update to 1.29.0.
new f2b686f gnu: r-varianttools: Update to 1.30.0.
new 65e0a7b gnu: r-heatplus: Update to 2.34.0.
new 621cd90 gnu: r-gosemsim: Update to 2.14.0.
new 8d30d59 gnu: r-anota: Update to 1.36.0.
new b1d76ad gnu: r-sigpathway: Update to 1.56.0.
new 1dec455 gnu: r-fgsea: Update to 1.14.0.
new 3a80f1c gnu: r-dose: Update to 3.14.0.
new 43fb14c gnu: r-enrichplot: Update to 1.8.1.
new 63c8323 gnu: r-clusterprofiler: Update to 3.16.0.
new 500f7df gnu: r-mlinterfaces: Update to 1.68.0.
new d200b4d gnu: r-annaffy: Update to 1.60.0.
new 4f2112a gnu: r-a4core: Update to 1.36.0.
new 33c9c85 gnu: r-a4classif: Update to 1.36.0.
new 6afea4e gnu: r-a4preproc: Update to 1.36.0.
new e47f9f4 gnu: r-a4reporting: Update to 1.36.0.
new 2a91c98 gnu: r-a4base: Update to 1.36.0.
new b391b1e gnu: r-a4: Update to 1.36.0.
new 35bcfae gnu: r-abseqr: Update to 1.6.0.
new 7450edc gnu: r-bacon: Update to 1.16.0.
new 6d02e17 gnu: r-rgadem: Update to 2.36.0.
new 352cfa3 gnu: r-motiv: Update to 1.43.0.
new da6a75f gnu: r-motifdb: Update to 1.30.0.
new e65783e gnu: r-motifbreakr: Update to 2.2.0.
new e6fbaf0 gnu: r-motifstack: Update to 1.32.0.
new 785c759 gnu: r-genomicscores: Update to 2.0.0.
new a007de8 gnu: r-atacseqqc: Update to 1.12.3.
new 19b39ac gnu: r-gofuncr: Update to 1.8.0.
new 6a65ac1 gnu: r-abaenrichment: Update to 1.18.0.
new 7866994 gnu: r-annotationfuncs: Update to 1.38.0.
new 231898d gnu: r-annotationtools: Update to 1.62.0.
new 6314938 gnu: r-allelicimbalance: Update to 1.26.0.
new e059ab2 gnu: r-aucell: Update to 1.10.0.
new 4eccf8e gnu: r-ebimage: Update to 4.30.0.
new 6e397aa gnu: r-yamss: Update to 1.14.0.
new a471def gnu: r-gtrellis: Update to 1.20.1.
new 63c1471 gnu: r-somaticsignatures: Update to 2.24.0.
new 8a5abc6 gnu: r-yapsa: Update to 1.14.0.
new f0439a1 gnu: r-gcrma: Update to 2.60.0.
new 9ce80f9 gnu: r-simpleaffy: Update to 2.64.0.
new 761c942 gnu: r-yaqcaffy: Update to 1.48.0.
new 70d90ae gnu: r-quantro: Update to 1.22.0.
new a37a6ff gnu: r-yarn: Update to 1.14.0.
new 1ec10e1 gnu: r-roar: Update to 1.24.0.
new bcd06bd gnu: r-xbseq: Update to 1.20.0.
new 11cf2d7 gnu: r-massspecwavelet: Update to 1.54.0.
new ff9f179 gnu: r-xcms: Update to 3.10.1.
new 996f07b gnu: r-wrench: Update to 1.6.0.
new ee0f746 gnu: r-wiggleplotr: Update to 1.12.0.
new 08c4d31 gnu: r-widgettools: Update to 1.66.0.
new 620cc4d gnu: r-webbioc: Update to 1.60.0.
new 8fdca89 gnu: r-zfpkm: Update to 1.10.0.
new 297854e gnu: r-rbowtie2: Update to 1.10.0.
new 8e5933a gnu: r-progeny: Update to 1.10.0.
new 989b7bb gnu: r-arrmnormalization: Update to 1.28.0.
new 173844f gnu: r-biocfilecache: Update to 1.12.0.
new ca8d80c gnu: r-iclusterplus: Update to 1.24.0.
new 568c392 gnu: r-rbowtie: Update to 1.28.0.
new 201902b gnu: r-sgseq: Update to 1.22.0.
new 2aff272 gnu: r-rhisat2: Update to 1.4.0.
new a84abf4 gnu: r-quasr: Update to 1.28.0.
new 1c5360a gnu: r-rqc: Update to 1.22.0.
new f50609a gnu: r-birewire: Update to 3.20.0.
new cb941ca gnu: r-birta: Update to 1.31.0.
new 905bbb1 gnu: r-multidataset: Update to 1.16.0.
new 7733416 gnu: r-ropls: Update to 1.20.0.
new 8b6f26e gnu: r-biosigner: Update to 1.16.0.
new 5ca991b gnu: r-annotatr: Update to 1.14.0.
new 5d63f69 gnu: r-rsubread: Update to 2.2.2.
new 6954950 gnu: r-flowutils: Update to 1.52.0.
new 0c2573e gnu: r-consensusclusterplus: Update to 1.52.0.
new 3c73d7c gnu: r-cytolib: Update to 2.0.3.
new faff2de gnu: r-flowcore: Update to 2.0.1.
new 76b163d gnu: r-flowmeans: Update to 1.48.0.
new 631b12c gnu: r-ncdfflow: Update to 2.34.0.
new 3407dfa gnu: r-ggcyto: Update to 1.16.0.
new 062789b gnu: r-flowviz: Update to 1.52.0.
new b347d6c gnu: r-flowclust: Update to 3.26.0.
new bafade8 gnu: r-rprotobuflib: Update to 2.0.0.
new a9af09d gnu: r-flowworkspace: Update to 4.0.3.
new 372caae gnu: r-flowstats: Update to 4.0.0.
new 8f5e167 gnu: r-opencyto: Update to 2.0.0.
new 8d5a83b gnu: r-cytoml: Update to 2.0.0.
new 32bd029 gnu: r-flowsom: Update to 1.20.0.
new 7bec32f gnu: r-mixomics: Update to 6.12.1.
new af66e35 gnu: r-depecher: Update to 1.4.0.
new 93235b1 gnu: r-rcistarget: Update to 1.8.0.
new e677c9b gnu: r-cicero: Update to 1.6.0.
new b328088 gnu: r-genie3: Update to 1.10.0.
new cad8a509 gnu: r-roc: Update to 1.64.0.
new 939ace9 gnu: r-watermelon: Update to 1.32.0.
new f4954b0 gnu: r-gdsfmt: Update to 1.24.0.
new 8112796 gnu: r-bigmelon: Update to 1.14.0.
new 83b7625 gnu: r-seqbias: Update to 1.36.0.
new efb44eb gnu: r-reqon: Update to 1.34.0.
new 12b255f gnu: r-wavcluster: Update to 2.22.0.
new 49dd504 gnu: r-timeseriesexperiment: Update to 1.6.0.
new 41f7fe4 gnu: r-variantfiltering: Update to 1.24.0.
new fbbaf5a gnu: r-variancepartition: Update to 1.18.0.
new 518050a gnu: r-htqpcr: Update to 1.42.0.
new a9148d0 gnu: r-unifiedwmwqpcr: Update to 1.24.0.
new 296992b gnu: r-bgmix: Update to 1.48.0.
new de91f15 gnu: r-bgx: Update to 1.54.0.
new 2415576 gnu: r-bhc: Update to 1.40.0.
new 7642517 gnu: r-bicare: Update to 1.46.0.
new a54fd40 gnu: r-bifet: Update to 1.8.0.
new d65bdbb gnu: r-rsbml: Update to 2.46.0.
new 0ff7246 gnu: r-hypergraph: Update to 1.60.0.
new 3116998 gnu: r-hyperdraw: Update to 1.40.0.
new f31edb0 gnu: r-biggr: Update to 1.24.0.
new eef9c99 gnu: r-bigmemoryextras: Update to 1.36.0.
new d0badcc gnu: r-bigpint: Update to 1.4.0.
new 06908a7 gnu: r-chemminer: Update to 3.40.0.
new c8cbde9 gnu: r-bioassayr: Update to 1.26.0.
new e09ca03 gnu: r-biobroom: Update to 1.20.0.
new 29b1702 gnu: r-graphite: Update to 1.34.0.
new affb4ab gnu: r-reactomepa: Update to 1.32.0.
new a74a427 gnu: r-ebarrays: Update to 2.52.0.
new 8b71b14 gnu: r-bioccasestudies: Update to 1.50.0.
new 543c63f gnu: r-biocgraph: Update to 1.50.0.
new b56a346 gnu: r-experimenthub: Update to 1.14.0.
new 4091eae gnu: r-multiassayexperiment: Update to 1.14.0.
new 1c51821 gnu: r-bioconcotk: Update to 1.8.0.
new 132abe5 gnu: r-biocor: Update to 1.12.0.
new 1759a13 gnu: r-biocpkgtools: Update to 1.6.0.
new 723fa00 gnu: r-biocset: Update to 1.2.1.
new 6a88291 gnu: r-biocworkflowtools: Update to 1.14.0.
new 6b9e3b9 gnu: r-biodist: Update to 1.60.0.
new 9ae4bd0 gnu: r-mzr: Update to 2.22.0.
The 296 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
gnu/packages/bioconductor.scm | 1063 +++++++++++++++++++++++----------------
gnu/packages/bioinformatics.scm | 524 ++++++++++---------
gnu/packages/cran.scm | 170 +++++++
gnu/packages/graph.scm | 4 +-
gnu/packages/node.scm | 3 +-
gnu/packages/statistics.scm | 4 +-
guix/build-system/r.scm | 4 +-
guix/import/cran.scm | 4 +-
8 files changed, 1110 insertions(+), 666 deletions(-)
- branch master updated (db6290a -> 9ae4bd0),
guix-commits <=
- 01/296: gnu: r-gprofiler: Move to (gnu packages cran)., guix-commits, 2020/06/12
- 02/296: guix: Update to Bioconductor 3.11., guix-commits, 2020/06/12
- 04/296: gnu: Add r-gprofiler2., guix-commits, 2020/06/12
- 05/296: gnu: Add r-scatterpie., guix-commits, 2020/06/12
- 06/296: gnu: Add r-v8., guix-commits, 2020/06/12
- 03/296: gnu: node: Build shared library., guix-commits, 2020/06/12
- 07/296: gnu: Add r-dot., guix-commits, 2020/06/12
- 10/296: gnu: r-genefilter: Update to 1.70.0., guix-commits, 2020/06/12
- 08/296: gnu: r-preprocesscore: Update to 1.50.0., guix-commits, 2020/06/12
- 09/296: gnu: r-rgraphviz: Update to 2.32.0., guix-commits, 2020/06/12