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307/318: gnu: Add r-greylistchip.
From: |
guix-commits |
Subject: |
307/318: gnu: Add r-greylistchip. |
Date: |
Fri, 20 Nov 2020 08:41:19 -0500 (EST) |
rekado pushed a commit to branch wip-r
in repository guix.
commit 46622f84571e252198cb2f021e8ca35cde0f18f5
Author: Roel Janssen <roel@gnu.org>
AuthorDate: Wed Nov 18 16:47:44 2020 +0100
gnu: Add r-greylistchip.
* gnu/packages/bioconductor.scm (r-greylistchip): New variable.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 43a95fe..a9b153d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1657,6 +1657,33 @@ effect sizes for a variety of GLM models, using
approximation of the
posterior for individual coefficients.")
(license license:gpl2)))
+(define-public r-greylistchip
+ (package
+ (name "r-greylistchip")
+ (version "1.22.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "GreyListChIP" version))
+ (sha256
+ (base32
+ "1d1yvza1aw3vs3di6mrra5l52ig0p9bpzprrqvknjaz5i4yb8ma6"))))
+ (properties `((upstream-name . "GreyListChIP")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-bsgenome" ,r-bsgenome)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicalignments" ,r-genomicalignments)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-mass" ,r-mass)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (home-page "https://bioconductor.org/packages/GreyListChIP")
+ (synopsis "Greylist artefact regions based on ChIP inputs")
+ (description "This package identifies regions of ChIP experiments with high
+signal in the input, that lead to spurious peaks during peak calling.")
+ (license license:artistic2.0)))
+
(define-public r-diffbind
(package
(name "r-diffbind")
- 285/318: gnu: r-gqtlstats: Update to 1.21.3., (continued)
- 285/318: gnu: r-gqtlstats: Update to 1.21.3., guix-commits, 2020/11/20
- 286/318: gnu: r-gviz: Update to 1.34.0., guix-commits, 2020/11/20
- 287/318: gnu: r-gwascat: Update to 2.22.0., guix-commits, 2020/11/20
- 288/318: gnu: r-sushi: Update to 1.28.0., guix-commits, 2020/11/20
- 293/318: gnu: r-systempiper: Update to 1.24.2., guix-commits, 2020/11/20
- 297/318: gnu: r-topgo: Update to 2.42.0., guix-commits, 2020/11/20
- 301/318: gnu: Add r-rcppnumerical., guix-commits, 2020/11/20
- 303/318: gnu: Add r-etrunct., guix-commits, 2020/11/20
- 304/318: gnu: Add r-invgamma., guix-commits, 2020/11/20
- 306/318: gnu: Add r-ashr., guix-commits, 2020/11/20
- 307/318: gnu: Add r-greylistchip.,
guix-commits <=
- 309/318: gnu: r-chippeakanno: Update to 3.24.1., guix-commits, 2020/11/20
- 310/318: gnu: r-biocneighbors: Update to 1.8.1., guix-commits, 2020/11/20
- 312/318: gnu: Add r-shadowtext., guix-commits, 2020/11/20
- 313/318: gnu: r-enrichplot: Update to 1.10.1., guix-commits, 2020/11/20
- 311/318: gnu: r-gosemsim: Update to 2.16.1., guix-commits, 2020/11/20
- 314/318: gnu: r-annaffy: Update to 1.62.0., guix-commits, 2020/11/20
- 316/318: gnu: r-beachmat: Update to 2.6.1., guix-commits, 2020/11/20
- 305/318: gnu: Add r-mixsqp., guix-commits, 2020/11/20
- 318/318: gnu: r-rhdf5lib: Fix build., guix-commits, 2020/11/20