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109/323: gnu: Add r-mscoreutils.
From: |
guix-commits |
Subject: |
109/323: gnu: Add r-mscoreutils. |
Date: |
Wed, 9 Dec 2020 06:46:48 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit fa2201c10837d06b727b2d9bce37ad04e9fe3dfd
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Thu Dec 3 22:23:46 2020 +0100
gnu: Add r-mscoreutils.
* gnu/packages/bioconductor.scm (r-mscoreutils): New variable.
---
gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 22cbf14..99f3c46 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8829,3 +8829,34 @@ contains high-performing functions operating on rows and
columns of
are optimized per data type and for subsetted calculations such that both
memory usage and processing time is minimized.")
(license license:expat)))
+
+(define-public r-mscoreutils
+ (package
+ (name "r-mscoreutils")
+ (version "1.2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "MsCoreUtils" version))
+ (sha256
+ (base32
+ "0fa3bcf2cmzf5y8wjs7pnzs26qwgqnrrl4hj4sa4fp9kv8z80630"))))
+ (properties `((upstream-name . "MsCoreUtils")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-mass" ,r-mass)
+ ("r-rcpp" ,r-rcpp)
+ ("r-s4vectors" ,r-s4vectors)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/RforMassSpectrometry/MsCoreUtils")
+ (synopsis "Core utils for mass spectrometry data")
+ (description
+ "This package defines low-level functions for mass spectrometry data and
+is independent of any high-level data structures. These functions include
+mass spectra processing functions (noise estimation, smoothing, binning),
+quantitative aggregation functions (median polish, robust summarisation,
+etc.), missing data imputation, data normalisation (quantiles, vsn, etc.) as
+well as misc helper functions, that are used across high-level data structure
+within the R for Mass Spectrometry packages.")
+ (license license:artistic2.0)))
- 78/323: gnu: r-a4core: Update to 1.38.0., (continued)
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- 150/323: gnu: r-rcistarget: Update to 1.10.0., guix-commits, 2020/12/09
- 79/323: gnu: r-a4classif: Update to 1.38.0., guix-commits, 2020/12/09
- 82/323: gnu: r-a4base: Update to 1.38.0., guix-commits, 2020/12/09
- 85/323: gnu: r-bacon: Update to 1.18.0., guix-commits, 2020/12/09
- 86/323: gnu: r-rgadem: Update to 2.38.0., guix-commits, 2020/12/09
- 91/323: gnu: r-atacseqqc: Update to 1.14.4., guix-commits, 2020/12/09
- 92/323: gnu: r-gofuncr: Update to 1.10.0., guix-commits, 2020/12/09
- 96/323: gnu: r-allelicimbalance: Update to 1.28.0., guix-commits, 2020/12/09
- 100/323: gnu: r-gtrellis: Update to 1.22.0., guix-commits, 2020/12/09
- 109/323: gnu: Add r-mscoreutils.,
guix-commits <=
- 113/323: gnu: r-widgettools: Update to 1.68.0., guix-commits, 2020/12/09
- 112/323: gnu: r-wiggleplotr: Update to 1.14.0., guix-commits, 2020/12/09
- 115/323: gnu: r-zfpkm: Update to 1.12.0., guix-commits, 2020/12/09
- 119/323: gnu: r-biocfilecache: Update to 1.14.0., guix-commits, 2020/12/09
- 120/323: gnu: r-iclusterplus: Update to 1.26.0., guix-commits, 2020/12/09
- 121/323: gnu: r-rbowtie: Update to 1.30.0., guix-commits, 2020/12/09
- 122/323: gnu: r-sgseq: Update to 1.24.0., guix-commits, 2020/12/09
- 125/323: gnu: r-rqc: Update to 1.24.0., guix-commits, 2020/12/09
- 127/323: gnu: r-multidataset: Update to 1.18.0., guix-commits, 2020/12/09
- 128/323: gnu: r-ropls: Update to 1.22.0., guix-commits, 2020/12/09