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04/06: gnu: Add r-deconrnaseq.
From: |
guix-commits |
Subject: |
04/06: gnu: Add r-deconrnaseq. |
Date: |
Mon, 31 Oct 2022 15:11:10 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit fc27bf5d7469ec019ff7866b3b728afa7c434f26
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Sun Oct 30 01:16:07 2022 +0200
gnu: Add r-deconrnaseq.
* gnu/packages/bioconductor.scm (r-deconrnaseq): New variable.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 80acaee764..321a9621f1 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3296,6 +3296,33 @@ Shiraishi-model signatures), computing weights that
reflect the contributions
of the signatures to the mutation load of the tumor.")
(license license:gpl2)))
+(define-public r-deconrnaseq
+ (package
+ (name "r-deconrnaseq")
+ (version "1.38.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "DeconRNASeq" version))
+ (sha256
+ (base32
+ "10smk88srxm58hli0fhkdfd6l5z02q58xc9mww39gkn71y0127k6"))))
+ (properties `((upstream-name . "DeconRNASeq")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-ggplot2
+ r-limsolve
+ r-pcamethods))
+ (home-page "https://bioconductor.org/packages/DeconRNASeq")
+ (synopsis
+ "Deconvolution of heterogeneous tissue samples for mRNA-Seq data")
+ (description
+ "DeconSeq is an R package for deconvolution of heterogeneous tissues
+based on mRNA-Seq data. It models the expression levels from heterogeneous
+cell populations in mRNA-Seq as the weighted average of expression from
+different constituting cell types and predicted cell type proportions of
+single expression profiles.")
+ (license license:gpl2)))
+
(define-public r-deconvr
(package
(name "r-deconvr")
- branch master updated (22c8783dff -> 72315072d6), guix-commits, 2022/10/31
- 02/06: gnu: Add r-decomplexdisease., guix-commits, 2022/10/31
- 03/06: gnu: Add r-decomptumor2sig., guix-commits, 2022/10/31
- 06/06: gnu: Add r-forestplot., guix-commits, 2022/10/31
- 01/06: gnu: Add r-deco., guix-commits, 2022/10/31
- 04/06: gnu: Add r-deconrnaseq.,
guix-commits <=
- 05/06: gnu: Add r-decontam., guix-commits, 2022/10/31