guix-commits
[Top][All Lists]
Advanced

[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

branch master updated: gnu: bedtools-2.18: Fix build.


From: guix-commits
Subject: branch master updated: gnu: bedtools-2.18: Fix build.
Date: Tue, 25 Apr 2023 13:41:53 -0400

This is an automated email from the git hooks/post-receive script.

rekado pushed a commit to branch master
in repository guix.

The following commit(s) were added to refs/heads/master by this push:
     new fc80efe1a0 gnu: bedtools-2.18: Fix build.
fc80efe1a0 is described below

commit fc80efe1a0ea27e429e6b7bf467dd1f6aafe3ddf
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Tue Apr 25 19:41:05 2023 +0200

    gnu: bedtools-2.18: Fix build.
    
    * gnu/packages/bioinformatics.scm (bedtools-2.18)[arguments]: Fix operators 
in
    'compatibility phase.
---
 gnu/packages/bioinformatics.scm | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d3e806bce6..1dbacdbd8d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -498,7 +498,11 @@ BED, GFF/GTF, VCF.")
                  "static constexpr float PERCENTAGE"))
               (substitute* "src/utils/general/DualQueue.h"
                 (("template <class T, template<class T> class CompareFunc>")
-                 "template <class T, template<class U> class CompareFunc>"))))
+                 "template <class T, template<class U> class CompareFunc>"))
+              (substitute* '("src/utils/BamTools/src/api/algorithms/Sort.h"
+                             
"src/utils/BamTools/src/api/internal/bam/BamMultiMerger_p.h")
+                (("(bool operator\\(\\).*) \\{" m pre)
+                 (string-append pre " const {")))))
           (delete 'configure)
           (replace 'install
             (lambda _



reply via email to

[Prev in Thread] Current Thread [Next in Thread]