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branch master updated: gnu: python-umap-learn: Patch for sklearn/numpy c
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guix-commits |
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branch master updated: gnu: python-umap-learn: Patch for sklearn/numpy compatibility. |
Date: |
Wed, 26 Apr 2023 12:57:29 -0400 |
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rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new e86851ccb3 gnu: python-umap-learn: Patch for sklearn/numpy
compatibility.
e86851ccb3 is described below
commit e86851ccb3df1e87efca7138ee8d055a30832a4e
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Wed Apr 26 18:34:46 2023 +0200
gnu: python-umap-learn: Patch for sklearn/numpy compatibility.
* gnu/packages/machine-learning.scm (python-umap-learn)[arguments]: Add
phase
'numpy-compatibility.
---
gnu/packages/machine-learning.scm | 12 ++++++++++++
1 file changed, 12 insertions(+)
diff --git a/gnu/packages/machine-learning.scm
b/gnu/packages/machine-learning.scm
index b4751507b7..e7415bbc93 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -3131,6 +3131,18 @@ These include a barrier, broadcast, and allreduce.")
(list
#:phases
#~(modify-phases %standard-phases
+ (add-after 'unpack 'numpy-compatibility
+ (lambda _
+ (substitute* "umap/tests/test_umap_metrics.py"
+ ;; See commit a714b59bd9e2ca2e63312bc3491b2b037a42f2f2
+ (("sparse_binary_data.todense\\(\\),")
+ "np.asarray(sparse_binary_data.todense()),")
+ ;; See commit c7d05683325589ad432a55e109cacb9d631cfaa9
+ (("sparse_spatial_data.todense\\(\\),")
+ "np.asarray(sparse_spatial_data.todense()),"))
+ ;; See commit 949abd082524fce8c45dfb147bcd8e8ef49eade3
+ (substitute* "umap/tests/test_umap_ops.py"
+ (("np.random,") "None,"))))
;; Numba needs a writable dir to cache functions.
(add-before 'check 'set-numba-cache-dir
(lambda _
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