branch master updated: gnu: Add fanc.

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rekado pushed a commit to branch master
in repository guix.

The following commit(s) were added to refs/heads/master by this push:
     new 83a6ca3c60 gnu: Add fanc.
83a6ca3c60 is described below

commit 83a6ca3c60155479525bbf01e7b9509a994c7d03
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Wed May 3 11:58:51 2023 +0200

    gnu: Add fanc.
    
    * gnu/packages/bioinformatics.scm (fanc): New variable.
---
 gnu/packages/bioinformatics.scm | 58 +++++++++++++++++++++++++++++++++++++++++
 1 file changed, 58 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 83ee4ac1df..8d739d4b52 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4655,6 +4655,64 @@ variety of diversity measures including those that make 
use of phylogenetic
 similarity of community members.")
    (license license:gpl3+)))
 
+(define-public fanc
+  (let ((commit "354401e52ba2320e6b1ba0d3b5aab3541d31c9f3")
+       (revision "1"))
+    (package
+      (name "fanc")
+      (version (git-version "0" revision commit))
+      (source (origin
+               (method git-fetch)
+               (uri (git-reference
+                     (url "https://github.com/vaquerizaslab/fanc.git";)
+                     (commit commit)))
+               (file-name (git-file-name name version))
+               (sha256
+                (base32
+                 "0vp2cak5snla4j2q23d3ixx016bwzvxfiv4z6yp7anl0xaksd5bl"))))
+      (build-system pyproject-build-system)
+      (arguments
+       (list
+        #:test-flags
+        '(list "-m" "not longrunning"
+               ;; XXX: some of the tests here just take forever
+               "--ignore=fanc/test/test_matrix.py")))
+      (propagated-inputs
+       (list python-biopython
+            python-cooler
+             python-deprecated
+            python-future
+            python-genomic-regions
+            python-gridmap
+            python-h5py
+            python-imageio
+            python-intervaltree
+            python-matplotlib
+            python-msgpack
+            python-msgpack-numpy
+             python-numpy
+            python-pandas
+            python-pillow
+            python-progressbar2
+            python-pybedtools
+            python-pybigwig
+            python-pysam
+            python-pywavelets
+            python-pyyaml
+            python-scikit-image
+            python-scikit-learn
+            python-scipy
+            python-seaborn
+            python-tables
+            python-tifffile))
+      (native-inputs
+       (list python-cython python-pytest))
+      (home-page "https://github.com/vaquerizaslab/fanc";)
+      (synopsis "Framework for the analysis of C-like data")
+      (description "FAN-C provides a pipeline for analysing Hi-C data starting
+at mapped paired-end sequencing reads.")
+      (license license:gpl3+))))
+
 (define-public fasttree
   (package
    (name "fasttree")