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branch master updated: gnu: Add r-multibac.


From: guix-commits
Subject: branch master updated: gnu: Add r-multibac.
Date: Mon, 08 May 2023 04:38:15 -0400

This is an automated email from the git hooks/post-receive script.

rekado pushed a commit to branch master
in repository guix.

The following commit(s) were added to refs/heads/master by this push:
     new 0e09e8ab15 gnu: Add r-multibac.
0e09e8ab15 is described below

commit 0e09e8ab1554a7dffd60101cb4e631b348e43c9c
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Thu May 4 17:46:40 2023 +0200

    gnu: Add r-multibac.
    
    * gnu/packages/bioconductor.scm (r-multibac): New variable.
---
 gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
 1 file changed, 30 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 768b55b25e..72bf40cc41 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -10101,6 +10101,36 @@ processing to visualization and annotation.")
 large datasets, including support for on-disk data representation.")
     (license license:expat)))
 
+(define-public r-multibac
+  (package
+    (name "r-multibac")
+    (version "1.10.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "MultiBaC" version))
+       (sha256
+        (base32 "1qwf1mvw81hb929xpnx5x910f7qnax9lkylhwzcdw1814s4zj25i"))))
+    (properties `((upstream-name . "MultiBaC")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-ggplot2
+           r-matrix
+           r-multiassayexperiment
+           r-pcamethods
+           r-plotrix
+           r-ropls))
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/MultiBaC";)
+    (synopsis "Multiomic batch effect correction")
+    (description
+     "MultiBaC is a strategy to correct batch effects from multiomic datasets
+distributed across different labs or data acquisition events.  MultiBaC is
+able to remove batch effects across different omics generated within separate
+batches provided that at least one common omic data type is included in all
+the batches considered.")
+    (license license:gpl3)))
+
 (define-public r-multtest
   (package
     (name "r-multtest")



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