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04/06: gnu: Remove r-genomegraphs.
From: |
guix-commits |
Subject: |
04/06: gnu: Remove r-genomegraphs. |
Date: |
Wed, 12 Jul 2023 07:23:24 -0400 (EDT) |
rekado pushed a commit to branch r-updates
in repository guix.
commit 3f00f62897b15b578ca20ba2efa3afb66ca1435d
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Wed Jul 12 13:09:03 2023 +0200
gnu: Remove r-genomegraphs.
This package was removed with Bioconductor release 3.11.
* gnu/packages/bioconductor.scm (r-genomegraphs): Remove variable.
---
gnu/packages/bioconductor.scm | 28 ----------------------------
1 file changed, 28 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 5810088c9f..05d7239984 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -16703,34 +16703,6 @@ model, amino acid change consequence, minor allele
frequencies across human
populations, splice site strength, conservation, etc.")
(license license:artistic2.0)))
-(define-public r-genomegraphs
- (package
- (name "r-genomegraphs")
- (version "1.46.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "GenomeGraphs" version))
- (sha256
- (base32
- "05vavhz936v7cknig2f2mn3fd9fiy54r3swlvifpawramblp1ags"))))
- (properties `((upstream-name . "GenomeGraphs")))
- (build-system r-build-system)
- (propagated-inputs
- (list r-biomart))
- (home-page "https://bioconductor.org/packages/GenomeGraphs/")
- (synopsis "Plotting genomic information from Ensembl")
- (description
- "Genomic data analyses requires integrated visualization of known genomic
-information and new experimental data. GenomeGraphs uses the biomaRt package
-to perform live annotation queries to Ensembl and translates this to e.g.
-gene/transcript structures in viewports of the grid graphics package. This
-results in genomic information plotted together with your data. Another
-strength of GenomeGraphs is to plot different data types such as array CGH,
-gene expression, sequencing and other data, together in one plot using the
-same genome coordinate system.")
- (license license:artistic2.0)))
-
(define-public r-variancepartition
(package
(name "r-variancepartition")
- branch r-updates updated (1b152ff9a7 -> 8ad31af070), guix-commits, 2023/07/12
- 02/06: gnu: r-pando: Relax requirements., guix-commits, 2023/07/12
- 01/06: gnu: r-biomvrcns: Patch use of removed constants., guix-commits, 2023/07/12
- 04/06: gnu: Remove r-genomegraphs.,
guix-commits <=
- 05/06: gnu: python-dask: Propagate python-click., guix-commits, 2023/07/12
- 03/06: gnu: Remove r-wavetiling., guix-commits, 2023/07/12
- 06/06: gnu: r-tgstat: Update to 2.3.24., guix-commits, 2023/07/12