branch master updated (4a027d2b0e -> f2f27c4952)

[guix-commits]

rekado pushed a change to branch master
in repository guix.

    from 4a027d2b0e gnu: rr: Fix typo in synopsis.
     new b43841c124 refresh: Sort update specs by package location.
     new 2680ec55ff gnu: r-bslib: Update to 0.5.0.
     new cca7d7ea4c gnu: r-rgl: Update to 1.2.1.
     new 7c2290f663 gnu: r-opencpu: Update to 2.2.10.
     new 60c70a9009 gnu: r-plotly: Update to 4.10.2.
     new febe08ee8a import/cran: Add one more package name transformation.
     new 138d0dd9ad gnu: r-digest: Update to 0.6.33.
     new 1b09d2e9ae gnu: r-lme4: Update to 1.1-34.
     new 1223a87a14 gnu: r-v8: Update to 4.3.2.
     new 95a4fc7e9c gnu: r-gprofiler2: Update to 0.2.2.
     new 2c04ca3de0 gnu: r-haven: Update to 2.5.3.
     new 64b18f3282 gnu: r-gmp: Update to 0.7-2.
     new 5aca0cd1e3 gnu: Add r-envstats.
     new 5dea2079b1 gnu: r-leidenalg: Update to 1.1.0.
     new 56b8a26951 gnu: r-terra: Update to 1.7-39.
     new 66e988201d gnu: r-igraph: Update to 1.5.0.
     new abd0c1b29d gnu: r-mlr3: Update to 0.16.1.
     new 49fe6b3d66 gnu: apache-arrow: Update to 12.0.1.
     new 347e3b1b75 gnu: r-biomartr: Update to 1.0.4.
     new 5f8104b3a4 gnu: r-numbat: Update to 1.3.2-1.
     new d669b30658 gnu: r-scistreer: Update to 1.2.0.
     new bb570c1534 gnu: r-ggpicrust2: Update to 1.7.1.
     new 1d6792cf83 gnu: r-datawizard: Update to 0.8.0.
     new 44e149cfaa gnu: r-googledrive: Update to 2.1.1.
     new 8825d76885 gnu: r-googlesheets4: Update to 1.1.1.
     new 00db622370 gnu: r-ggpmisc: Update to 0.5.3.
     new be7139e592 gnu: r-ecp: Update to 3.1.5.
     new a71b693379 gnu: r-readxl: Update to 1.4.3.
     new 3f24044d91 gnu: r-jsonlite: Update to 1.8.7.
     new 90af9e7b2d gnu: r-curl: Update to 5.0.1.
     new e7e8ef4c4c gnu: r-fastdummies: Update to 1.7.3.
     new 27173e7545 gnu: r-ggtern: Update to 3.4.2.
     new f40b72c9c1 gnu: r-pkgbuild: Update to 1.4.2.
     new 2481363f9f gnu: r-pkgload: Update to 1.3.2.1.
     new b4c0815613 gnu: r-rcpp: Update to 1.0.11.
     new 5f609dc440 gnu: r-rcppspdlog: Update to 0.0.13.
     new 96e895f6ea gnu: r-rcppthread: Update to 2.1.5.
     new 551e46d290 gnu: r-ctrdata: Update to 1.13.3.
     new 2ba310e2af gnu: r-sp: Update to 2.0-0.
     new 64d4396288 gnu: r-emdbook: Update to 1.3.13.
     new 40fb5a1f4c gnu: r-psych: Update to 2.3.6.
     new 66d6467f6c gnu: r-broom: Update to 1.0.5.
     new fde0293e71 gnu: r-pan: Update to 1.8.
     new e261244e7f gnu: r-mice: Update to 3.16.0.
     new e6fe82b26b gnu: r-gss: Update to 2.2-5.
     new 579f31b517 gnu: r-processx: Update to 3.8.2.
     new 105b50bd47 gnu: r-webshot: Update to 0.5.5.
     new b3be4e8ea7 gnu: r-vctrs: Update to 0.6.3.
     new d37077053e gnu: r-quantmod: Update to 0.4.23.
     new 230aa51bb8 gnu: r-cubature: Update to 2.1.0.
     new b3983eb663 gnu: r-sitar: Update to 1.4.0.
     new 6b4689ced6 gnu: r-renv: Update to 1.0.0.
     new 3c08e4faff gnu: r-reticulate: Update to 1.30.
     new 94afe638da gnu: r-insight: Update to 0.19.3.
     new 172aeabe36 gnu: r-flextable: Update to 0.9.2.
     new 41e722549a gnu: r-golem: Update to 0.4.1.
     new 530a3023e0 gnu: r-proc: Update to 1.18.4.
     new 31eb88db4b gnu: r-qualv: Update to 0.3-5.
     new c16238380e gnu: r-labelled: Update to 2.12.0.
     new 63319c1939 gnu: r-raster: Update to 3.6-23.
     new acd42d0d39 gnu: r-tarchetypes: Update to 0.7.7.
     new e29a78dbcf gnu: r-targets: Update to 1.2.0.
     new 2a3124d924 gnu: r-multcomp: Update to 1.4-25.
     new cbc2b21497 gnu: r-emmeans: Update to 1.8.7.
     new c62608ab3a gnu: r-ggeffects: Update to 1.2.3.
     new 6b8f69add4 gnu: r-usethis: Update to 2.2.2.
     new 7a331225a6 gnu: r-rcppannoy: Update to 0.0.21.
     new 04e54c155d gnu: r-biocmanager: Update to 1.30.21.
     new e6802a6816 gnu: r-admisc: Update to 0.33.
     new f1ae6affed gnu: r-kohonen: Update to 3.0.12.
     new d459606e51 gnu: r-gargle: Update to 1.5.1.
     new c0273b86d7 gnu: r-future: Update to 1.33.0.
     new 473142bc5e gnu: r-remacor: Update to 0.0.16.
     new 3d677f4bc1 gnu: r-spdata: Update to 2.3.0.
     new 5286885510 gnu: r-polspline: Update to 1.1.23.
     new 78a7979cdb gnu: r-ggplotify: Update to 0.1.1.
     new f0cc272cdb gnu: r-ggfun: Update to 0.1.1.
     new 177339b8b4 gnu: r-arrow: Update to 12.0.1.
     new b13c386550 gnu: r-styler: Update to 1.10.1.
     new bf7388bcb2 gnu: r-uwot: Update to 0.1.16.
     new ce0d2221ee gnu: r-desolve: Update to 1.36.
     new 8308f9ee39 gnu: r-pmcmrplus: Update to 1.9.7.
     new 53dbbb1aa8 gnu: r-mda: Update to 0.5-4.
     new ae0384d46a gnu: r-r-huge: Update to 0.10.0.
     new 9503d885a8 gnu: r-gdina: Update to 2.9.4.
     new b12240ae55 gnu: r-torch: Update to 0.11.0.
     new c09ccaa7f2 gnu: r-stanheaders: Update to 2.26.27.
     new 1d933c516d gnu: r-kutils: Update to 1.72.
     new 084af94196 gnu: r-aws: Update to 2.5-3.
     new 4169a87e19 gnu: r-scatterpie: Update to 0.2.1.
     new 86231c1cfd gnu: r-fastshap: Update to 0.1.0.
     new 1bec2b33da gnu: r-spatstat-sparse: Update to 3.0-2.
     new 4ed654c934 gnu: r-spatstat-geom: Update to 3.2-2.
     new e3fd0a9bcb gnu: r-cpp11: Update to 0.4.4.
     new ad78b3cc3d gnu: r-rfast: Update to 2.0.8.
     new 869a579c83 gnu: r-confintr: Update to 1.0.2.
     new e744151010 gnu: r-scattermore: Update to 1.2.
     new 11fe7a5bdc gnu: r-seurat: Update to 4.3.0.1.
     new 362b352c92 gnu: r-mlr3tuning: Update to 0.19.0.
     new 7ecefb14dd gnu: r-downlit: Update to 0.4.3.
     new 24177b718f gnu: r-readtext: Update to 0.90.
     new 6945b8502a gnu: r-intervals: Update to 0.15.4.
     new 432ffdb433 gnu: r-delaporte: Update to 8.1.1.
     new 8302b17bff gnu: r-paws-common: Update to 0.5.8.
     new a656a07e37 gnu: r-paws-customer-engagement: Update to 0.3.0.
     new 17148282b6 gnu: r-paws-cost-management: Update to 0.3.1.
     new 52312a4551 gnu: r-paws-developer-tools: Update to 0.3.1.
     new 688e22f4b7 gnu: r-paws-end-user-computing: Update to 0.3.0.
     new f85b362b81 gnu: r-paws-application-integration: Update to 0.3.1.
     new 885c7b0b3c gnu: r-paws-security-identity: Update to 0.3.1.
     new 9ac7524dd4 gnu: r-paws-analytics: Update to 0.3.0.
     new 969d35e169 gnu: r-paws-machine-learning: Update to 0.3.0.
     new 5e436baab7 gnu: r-paws-management: Update to 0.3.1.
     new 6df06f6712 gnu: r-paws-networking: Update to 0.3.0.
     new 39302d72b8 gnu: r-paws-database: Update to 0.3.0.
     new c7d49778e2 gnu: r-paws-storage: Update to 0.3.0.
     new 5933aadf2f gnu: r-paws-compute: Update to 0.3.1.
     new 42b5758b82 gnu: r-paws: Update to 0.3.0.
     new f072cd9486 gnu: r-kernsmooth: Update to 2.23-22.
     new b372435930 gnu: r-matrix: Update to 1.6-0.
     new 6276fbb64a gnu: r-testthat: Update to 3.1.10.
     new 1493844a1e gnu: r-dbplyr: Update to 2.3.3.
     new 4ec94fe0a9 gnu: r-locfit: Update to 1.5-9.8.
     new c5c0f85b77 gnu: r-xml2: Update to 1.3.5.
     new b8112b4600 gnu: r-rstudioapi: Update to 0.15.0.
     new 7cb71cb2fb gnu: r-rcpparmadillo: Update to 0.12.4.1.0.
     new e8ef13993e gnu: r-rmarkdown: Update to 2.23.
     new f9dc378cb4 gnu: r-mvtnorm: Update to 1.2-2.
     new 86c7032abf gnu: r-deoptimr: Update to 1.0-14.
     new 387c1fafce gnu: r-robustbase: Update to 0.99-0.
     new 2108aa1975 gnu: r-rrcov: Update to 1.7-4.
     new 42c29d9d22 gnu: r-robust: Update to 0.7-2.
     new 5a1c16fa18 gnu: r-pbapply: Update to 1.7-2.
     new c141725c65 gnu: r-logspline: Update to 2.1.20.
     new ee50cae529 gnu: r-norm: Update to 1.0-11.1.
     new b10bff65be gnu: r-mzr: Update to 2.34.1.
     new 990bac0ea5 gnu: Add r-pfamanalyzer.
     new b4cafa71ae gnu: Add r-saturn.
     new 558637533f gnu: r-gdsfmt: Update to 1.36.1.
     new 4db85c197b gnu: r-ancombc: Update to 2.2.1.
     new f0c82ddced gnu: r-alevinqc: Update to 1.16.1.
     new 6e83dee12a gnu: r-bambu: Update to 3.2.5.
     new 5eaf9f6b83 gnu: r-delayedarray: Update to 0.26.6.
     new b864a5956f gnu: r-iranges: Update to 2.34.1.
     new a9d140996c gnu: r-isoformswitchanalyzer: Update to 2.0.1.
     new 565d84170a gnu: r-affy: Update to 1.78.1.
     new 3c201e1aab gnu: r-annotationdbi: Update to 1.62.2.
     new c397d6a5e1 gnu: r-genomeinfodb: Update to 1.36.1.
     new 1f0633db11 gnu: r-annotationforge: Update to 1.42.2.
     new 6604189891 gnu: r-biomart: Update to 2.56.1.
     new 2b62bc3f67 gnu: r-deseq2: Update to 1.40.2.
     new 3193a2a04d gnu: r-genomicfeatures: Update to 1.52.1.
     new 5db8d3e600 gnu: r-lfa: Update to 2.0.11.
     new 5588562fb9 gnu: r-limma: Update to 3.56.2.
     new 464ad1fd79 gnu: r-maaslin2: Update to 1.14.1.
     new 0a0304ef3a gnu: r-summarizedexperiment: Update to 1.30.2.
     new 1b83659902 gnu: r-systempiper: Update to 2.6.3.
     new 6652f72e13 gnu: r-matrixgenerics: Update to 1.12.2.
     new 75a5504e49 gnu: r-interactionset: Update to 1.28.1.
     new 0514c45d4a gnu: r-glmgampoi: Update to 1.12.2.
     new a98f8bdcf3 gnu: r-lpsymphony: Update to 1.28.1.
     new 1d53aa680e gnu: r-motifbreakr: Update to 2.14.2.
     new 8637eba2a5 gnu: r-quasr: Update to 1.40.1.
     new c4ea43f75c gnu: r-variantfiltering: Update to 1.36.1.
     new e728562cd3 gnu: r-variancepartition: Update to 1.30.2.
     new aada7f3a53 gnu: r-universalmotif: Update to 1.18.1.
     new 3bfbd6ddd8 gnu: r-bioccheck: Update to 1.36.1.
     new 72c0125649 gnu: r-fishpond: Update to 2.6.2.
     new 5a61307327 gnu: r-sparsematrixstats: Update to 1.12.2.
     new bdd11e0229 gnu: r-delayedmatrixstats: Update to 1.22.1.
     new 165a4755a4 gnu: r-basilisk: Update to 1.12.1.
     new cbdaf26d0c gnu: r-biocthis: Update to 1.10.3.
     new 2ef18c24a4 gnu: r-bionero: Update to 1.8.5.
     new f2f27c4952 gnu: r-tcgabiolinks: Update to 2.28.3.

The 174 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.


Summary of changes:
 gnu/packages/bioconductor.scm | 264 +++++++++++-------
 gnu/packages/cran.scm         | 631 ++++++++++++++++++++++++------------------
 gnu/packages/databases.scm    |   4 +-
 gnu/packages/statistics.scm   |  85 +++---
 guix/import/cran.scm          |   1 +
 guix/scripts/refresh.scm      |  33 ++-
 6 files changed, 587 insertions(+), 431 deletions(-)