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138/174: gnu: Add r-saturn.
From: |
guix-commits |
Subject: |
138/174: gnu: Add r-saturn. |
Date: |
Wed, 12 Jul 2023 08:32:13 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit b4cafa71ae50fd2a5f0f24abf6b4b77ba5227ff6
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Tue Jul 11 16:36:55 2023 +0200
gnu: Add r-saturn.
* gnu/packages/bioconductor.scm (r-saturn): New variable.
---
gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++
1 file changed, 34 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 840a9cdde8..a49a00ea1d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8803,6 +8803,40 @@ differential expression analysis, RNAseq data and
related problems.")
;; Any version of the LGPL
(license license:lgpl3+)))
+(define-public r-saturn
+ (package
+ (name "r-saturn")
+ (version "1.8.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "satuRn" version))
+ (sha256
+ (base32
+ "0frm7iblxkc8ajcdqrfgsvf4krn6x8cr3mx7fnzq06xij0mqm3sj"))))
+ (properties `((upstream-name . "satuRn")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-biocparallel
+ r-boot
+ r-ggplot2
+ r-limma
+ r-locfdr
+ r-matrix
+ r-pbapply
+ r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/statOmics/satuRn")
+ (synopsis
+ "Analysis of differential transcript usage for scRNA-seq applications")
+ (description
+ "satuRn provides a framework for performing differential transcript usage
+analyses. The package consists of three main functions. The first function,
+@code{fitDTU}, fits quasi-binomial generalized linear models that model
+transcript usage in different groups of interest. The second function,
+@code{testDTU}, tests for differential usage of transcripts between groups of
+interest. Finally, @code{plotDTU} visualizes the usage profiles of
+transcripts in groups of interest.")
+ (license license:artistic2.0)))
+
(define-public r-scannotatr
(package
(name "r-scannotatr")
- 110/174: gnu: r-paws-security-identity: Update to 0.3.1., (continued)
- 110/174: gnu: r-paws-security-identity: Update to 0.3.1., guix-commits, 2023/07/12
- 113/174: gnu: r-paws-management: Update to 0.3.1., guix-commits, 2023/07/12
- 117/174: gnu: r-paws-compute: Update to 0.3.1., guix-commits, 2023/07/12
- 121/174: gnu: r-testthat: Update to 3.1.10., guix-commits, 2023/07/12
- 122/174: gnu: r-dbplyr: Update to 2.3.3., guix-commits, 2023/07/12
- 129/174: gnu: r-deoptimr: Update to 1.0-14., guix-commits, 2023/07/12
- 133/174: gnu: r-pbapply: Update to 1.7-2., guix-commits, 2023/07/12
- 136/174: gnu: r-mzr: Update to 2.34.1., guix-commits, 2023/07/12
- 144/174: gnu: r-iranges: Update to 2.34.1., guix-commits, 2023/07/12
- 143/174: gnu: r-delayedarray: Update to 0.26.6., guix-commits, 2023/07/12
- 138/174: gnu: Add r-saturn.,
guix-commits <=
- 140/174: gnu: r-ancombc: Update to 2.2.1., guix-commits, 2023/07/12
- 150/174: gnu: r-biomart: Update to 2.56.1., guix-commits, 2023/07/12
- 157/174: gnu: r-systempiper: Update to 2.6.3., guix-commits, 2023/07/12
- 149/174: gnu: r-annotationforge: Update to 1.42.2., guix-commits, 2023/07/12
- 154/174: gnu: r-limma: Update to 3.56.2., guix-commits, 2023/07/12
- 153/174: gnu: r-lfa: Update to 2.0.11., guix-commits, 2023/07/12
- 165/174: gnu: r-variancepartition: Update to 1.30.2., guix-commits, 2023/07/12
- 158/174: gnu: r-matrixgenerics: Update to 1.12.2., guix-commits, 2023/07/12
- 167/174: gnu: r-bioccheck: Update to 1.36.1., guix-commits, 2023/07/12
- 168/174: gnu: r-fishpond: Update to 2.6.2., guix-commits, 2023/07/12