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139/174: gnu: r-gdsfmt: Update to 1.36.1.
From: |
guix-commits |
Subject: |
139/174: gnu: r-gdsfmt: Update to 1.36.1. |
Date: |
Wed, 12 Jul 2023 08:32:13 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 558637533f3adbf00fecbd921de6435f6ef9f93d
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Tue Jul 11 16:37:11 2023 +0200
gnu: r-gdsfmt: Update to 1.36.1.
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.36.1.
[properties]: Tell updater to leave the extra inputs be.
---
gnu/packages/bioconductor.scm | 8 +++++---
1 file changed, 5 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a49a00ea1d..912946d974 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -16394,14 +16394,14 @@ metrics, with methods for objects produced by the
@code{methylumi} and
(define-public r-gdsfmt
(package
(name "r-gdsfmt")
- (version "1.36.0")
+ (version "1.36.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "gdsfmt" version))
(sha256
(base32
- "10k445cwb5jhgcr0zf85x24mvldwk26zpwh0wq4himr44aha3bwx"))
+ "11qib2znznzvyb0x9qm1nfg9lhyqy63yrdjicy7n3n6l8dfd2lx7"))
(modules '((guix build utils)))
;; Remove bundled sources of zlib, lz4, and xz. Don't attempt to build
;; them and link with system libraries instead.
@@ -16424,7 +16424,9 @@ metrics, with methods for objects produced by the
@code{methylumi} and
(substitute* "src/CoreArray/dStream.h"
(("include \"../(ZLIB|LZ4|XZ/api)/(.*)\"" _ _ header)
(string-append "include <" header ">")))))))
- (properties `((upstream-name . "gdsfmt")))
+ (properties
+ `((upstream-name . "gdsfmt")
+ (updater-extra-inputs . ("lz4" "xz" "zlib"))))
(build-system r-build-system)
(inputs
(list lz4 xz zlib))
- 119/174: gnu: r-kernsmooth: Update to 2.23-22., (continued)
- 119/174: gnu: r-kernsmooth: Update to 2.23-22., guix-commits, 2023/07/12
- 118/174: gnu: r-paws: Update to 0.3.0., guix-commits, 2023/07/12
- 128/174: gnu: r-mvtnorm: Update to 1.2-2., guix-commits, 2023/07/12
- 125/174: gnu: r-rstudioapi: Update to 0.15.0., guix-commits, 2023/07/12
- 132/174: gnu: r-robust: Update to 0.7-2., guix-commits, 2023/07/12
- 134/174: gnu: r-logspline: Update to 2.1.20., guix-commits, 2023/07/12
- 126/174: gnu: r-rcpparmadillo: Update to 0.12.4.1.0., guix-commits, 2023/07/12
- 124/174: gnu: r-xml2: Update to 1.3.5., guix-commits, 2023/07/12
- 137/174: gnu: Add r-pfamanalyzer., guix-commits, 2023/07/12
- 141/174: gnu: r-alevinqc: Update to 1.16.1., guix-commits, 2023/07/12
- 139/174: gnu: r-gdsfmt: Update to 1.36.1.,
guix-commits <=
- 155/174: gnu: r-maaslin2: Update to 1.14.1., guix-commits, 2023/07/12
- 159/174: gnu: r-interactionset: Update to 1.28.1., guix-commits, 2023/07/12
- 166/174: gnu: r-universalmotif: Update to 1.18.1., guix-commits, 2023/07/12
- 170/174: gnu: r-delayedmatrixstats: Update to 1.22.1., guix-commits, 2023/07/12
- 116/174: gnu: r-paws-storage: Update to 0.3.0., guix-commits, 2023/07/12
- 120/174: gnu: r-matrix: Update to 1.6-0., guix-commits, 2023/07/12
- 131/174: gnu: r-rrcov: Update to 1.7-4., guix-commits, 2023/07/12
- 174/174: gnu: r-tcgabiolinks: Update to 2.28.3., guix-commits, 2023/07/12
- 130/174: gnu: r-robustbase: Update to 0.99-0., guix-commits, 2023/07/12
- 148/174: gnu: r-genomeinfodb: Update to 1.36.1., guix-commits, 2023/07/12