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01/08: build-system/pyproject: Use python-sans-pip-wrapper as default-py
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From: |
guix-commits |
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Subject: |
01/08: build-system/pyproject: Use python-sans-pip-wrapper as default-python. |
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Date: |
Wed, 2 Aug 2023 06:38:39 -0400 (EDT) |
lbraun pushed a commit to branch pyproject-toml
in repository guix.
commit 70baccd8068f35ff8dce0955eaea60f7ea9c240e
Author: Lars-Dominik Braun <lars@6xq.net>
AuthorDate: Thu May 11 08:33:02 2023 +0200
build-system/pyproject: Use python-sans-pip-wrapper as default-python.
Also adds python-setuptools and python-wheel to relevant packages,
either to native-inputs or to propagated inputs if the pkg_resources
Python module is loaded at runtime.
* guix/build-system/pyproject.scm (default-python): Default to
python-sans-pip-wrapper.
---
gnu/packages/admin.scm | 2 +-
gnu/packages/astronomy.scm | 81 +++++++----
gnu/packages/bioinformatics.scm | 79 ++++++++---
gnu/packages/bootloaders.scm | 3 +
gnu/packages/check.scm | 9 +-
gnu/packages/databases.scm | 12 +-
gnu/packages/digest.scm | 2 +-
gnu/packages/engineering.scm | 2 +-
gnu/packages/fontutils.scm | 9 +-
gnu/packages/geo.scm | 10 +-
gnu/packages/graph.scm | 7 +-
gnu/packages/graphviz.scm | 4 +-
gnu/packages/license.scm | 5 +-
gnu/packages/machine-learning.scm | 32 +++--
gnu/packages/maths.scm | 4 +-
gnu/packages/monitoring.scm | 2 +-
gnu/packages/package-management.scm | 6 +-
gnu/packages/potassco.scm | 10 +-
gnu/packages/protobuf.scm | 4 +-
gnu/packages/python-build.scm | 3 +-
gnu/packages/python-check.scm | 30 +++--
gnu/packages/python-compression.scm | 20 ++-
gnu/packages/python-crypto.scm | 15 ++-
gnu/packages/python-science.scm | 19 ++-
gnu/packages/python-web.scm | 57 +++++---
gnu/packages/python-xyz.scm | 260 +++++++++++++++++++++++++-----------
gnu/packages/qt.scm | 3 +-
gnu/packages/rpc.scm | 2 +-
gnu/packages/serialization.scm | 4 +-
gnu/packages/sphinx.scm | 4 +-
gnu/packages/statistics.scm | 14 +-
gnu/packages/terminals.scm | 5 +-
gnu/packages/time.scm | 3 +-
gnu/packages/tor.scm | 4 +-
gnu/packages/tree-sitter.scm | 4 +-
gnu/packages/video.scm | 2 +-
gnu/packages/vim.scm | 4 +-
guix/build-system/pyproject.scm | 7 +-
38 files changed, 516 insertions(+), 227 deletions(-)
diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm
index fa697b79fb..75b8c9f2f1 100644
--- a/gnu/packages/admin.scm
+++ b/gnu/packages/admin.scm
@@ -4848,7 +4848,7 @@ LUKS volumes encrypted with the user's log-in password.")
(lambda _
(substitute* (find-files "tests" "^test.*\\.py$")
(("America/Los_Angeles") "PST8PDT")))))))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(propagated-inputs
(list python-pygments python-ruamel.yaml python-xmltodict))
(home-page "https://github.com/kellyjonbrazil/jc";)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 5b9434fb33..8fc727e0d6 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -521,7 +521,8 @@ in FITS files.")
(propagated-inputs (list python-astropy python-matplotlib python-numpy
python-scikit-learn python-scipy))
(native-inputs (list python-pytest-astropy-header python-pytest-cov
- python-pytest-doctestplus python-pytest-remotedata))
+ python-pytest-doctestplus python-pytest-remotedata
+ python-setuptools python-wheel))
(home-page "https://astroml.org";)
(synopsis "Tools for machine learning and data mining in astronomy")
(description "This package provides tools for machine learning and data
@@ -613,7 +614,8 @@ CFITSIO library. Among other things, it can
;; XXX: we don't have supersmoother
" and not test_supersmoother.py"))))
(propagated-inputs (list python-astroml python-numpy python-scipy))
- (native-inputs (list python-pytest python-nose python-setuptools-scm))
+ (native-inputs (list python-pytest python-nose python-setuptools-scm
+ python-setuptools python-wheel))
(home-page "https://github.com/astroml/gatspy";)
(synopsis "General tools for astronomical time series in Python")
(description "This package provides general tools for astronomical time
@@ -1470,7 +1472,9 @@ astronomy and astrophysics.")
(list python-extension-helpers
python-hypothesis
python-pytest-astropy
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-astropy python-numpy))
(home-page "https://github.com/astropy/astropy-healpix";)
@@ -1553,7 +1557,9 @@ to access online Astronomical data. Each web service has
its own sub-package.")
python-pytest-astropy
python-scikit-image
python-scipy
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-astropy python-numpy))
(home-page "https://github.com/astropy/astroscrappy";)
(synopsis "Speedy Cosmic Ray Annihilation Package in Python")
@@ -1651,7 +1657,9 @@ bad pixel tracking throughout the reduction process.")
python-pytest
python-pytest-cov
python-pytest-remotedata
- python-xarray))
+ python-xarray
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/MAVENSDC/cdflib";)
(synopsis "Python library to deal with NASA's CDF astronmical data format")
(description "This package provides a Python @acronym{CDF, Computable
@@ -1741,7 +1749,9 @@ provide related services.")
(list python-astropy
python-pytest
python-pytest-cov
- python-pytest-mypy))
+ python-pytest-mypy
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/poliastro/czml3";)
(synopsis "Python library to write CZML")
(description
@@ -1818,9 +1828,10 @@ used with local NetDRMS sites.")
;; Cython extensions have to be built before running
;; the tests.
(invoke "python" "setup.py" "build_ext"
"--inplace"))))))
- (propagated-inputs (list python-astropy python-numpy))
+ (propagated-inputs (list python-astropy python-numpy python-setuptools))
(native-inputs (list python-coverage python-flake8 python-pytest
- python-pytest-cov python-setuptools-scm))
+ python-pytest-cov python-setuptools-scm
+ python-wheel))
(home-page "https://github.com/spacetelescope/drizzle";)
(synopsis
"Astronomical tool for combining dithered images into a single image")
@@ -1871,7 +1882,8 @@ of dates.")
(arguments
(list #:tests? #f)) ; Requires HTTP(S) access to api.beta.helioviewer.org
(propagated-inputs (list python-pydantic python-requests))
- (native-inputs (list python-pytest python-pytest-astropy))
+ (native-inputs (list python-pytest python-pytest-astropy python-setuptools
+ python-wheel))
(home-page "https://helioviewer.org/";)
(synopsis "Helioviewer Python API Wrapper")
(description "@code{hvpy} is a Python API wrapper around the formal
@@ -1892,7 +1904,9 @@ of dates.")
(native-inputs
(list python-pytest
python-pytest-mpl
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-astropy
python-matplotlib
@@ -2039,7 +2053,9 @@ Low-Earth Orbit (LEO).")
python-pytest
python-pytest-astropy
python-sphinx
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://poppy-optics.readthedocs.io/";)
(synopsis "Physical Optics Propagation in Python")
(description
@@ -2069,7 +2085,8 @@ interest, and which require portability between platforms
or ease of scripting."
(base32 "17acv1yhz1jrsx9f35nr1vg276ibaivh4i243qkmp6abzvfyg907"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest-astropy python-requests-mock python-setuptools-scm))
+ (list python-pytest-astropy python-requests-mock python-setuptools-scm
+ python-setuptools python-wheel))
(propagated-inputs
(list python-astropy python-mimeparse python-pillow python-requests))
(home-page "https://github.com/astropy/pyvo";)
@@ -2405,8 +2422,9 @@ spherical polygons that represent arbitrary regions of
the sky.")
;; the tests.
(invoke "python" "setup.py" "build_ext"
"--inplace"))))))
- (propagated-inputs (list python-numpy python-scipy))
- (native-inputs (list python-pytest python-setuptools-scm))
+ (propagated-inputs (list python-numpy python-scipy python-setuptools))
+ (native-inputs (list python-pytest python-setuptools-scm
+ python-wheel))
(home-page "https://github.com/spacetelescope/stsci.image";)
(synopsis "Image array manipulation functions")
(description
@@ -2456,7 +2474,8 @@ task}.")
#:tests? #f))
(propagated-inputs (list python-numpy))
(native-inputs (list python-codecov python-pytest python-pytest-cov
- python-setuptools-scm))
+ python-setuptools python-setuptools-scm
+ python-wheel))
(home-page "https://stscistimage.readthedocs.io/en/latest/";)
(synopsis "STScI image processing")
(description "This package provides an astronomical Python package with
@@ -2486,7 +2505,9 @@ image processing functions: @code{xyxymatch},
@code{geomap}.")
python-pytest-cov
python-pytest-doctestplus
python-pytest-openfiles
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/spacetelescope/stcal";)
(synopsis "STScI tools and algorithms used in calibration pipelines")
(description "STScI tools and algorithms used in calibration pipelines.")
@@ -3296,7 +3317,9 @@ functions, so that they can be called with scalar or
array inputs.")
(native-inputs
(list python-cython
python-pandas
- python-pytest))
+ python-pytest
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-h5py
python-matplotlib
@@ -3328,9 +3351,10 @@ N-Chilada and RAMSES AMR outputs.")
(setenv "PYSYN_CDBS"
(string-append #$output "/crds")))))))
(native-inputs (list python-pytest python-pytest-remotedata
- python-setuptools-scm))
+ python-setuptools-scm python-wheel))
(propagated-inputs (list python-astropy python-beautifulsoup4 python-numpy
- python-pytest-astropy-header python-six))
+ python-pytest-astropy-header python-six
+ python-setuptools))
(home-page "https://github.com/spacetelescope/pysynphot";)
(synopsis "Python Synthetic Photometry Utilities")
(description
@@ -3396,7 +3420,7 @@ datetime object.")
#:tests? #f))
(propagated-inputs (list python-astropy python-numpy python-scipy))
(native-inputs (list python-pytest python-pytest-astropy
- python-setuptools-scm))
+ python-setuptools-scm python-setuptools python-wheel))
(home-page "https://github.com/spacetelescope/synphot_refactor";)
(synopsis "Synthetic photometry using Astropy")
(description
@@ -3467,7 +3491,9 @@ between image and reference catalogs. Currently only
aligning images with
python-pytest-openfiles
python-pytest-remotedata
python-semantic-version
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-asdf-standard
python-asdf-transform-schemas
@@ -3514,7 +3540,9 @@ implementation of the ASDF Standard.")
python-pypa-build
python-pytest
python-packaging
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-importlib-resources))
(home-page "https://asdf-standard.readthedocs.io/";)
(synopsis "ASDF standard schemas")
@@ -3542,7 +3570,7 @@ up-front for extensibility.")
(arguments
;; Dependency cycle with python-asdf
(list #:tests? #f))
- (native-inputs (list python-setuptools-scm))
+ (native-inputs (list python-setuptools-scm python-setuptools python-wheel))
(propagated-inputs (list python-asdf-standard python-importlib-resources))
(home-page "https://github.com/asdf-format/asdf-transform-schemas";)
(synopsis "ASDF schemas for transforms")
@@ -3661,7 +3689,7 @@ install an implementation package such as asdf-astropy.")
(arguments
;; Dependency cycle with python-asdf
(list #:tests? #f))
- (native-inputs (list python-setuptools-scm))
+ (native-inputs (list python-setuptools-scm python-setuptools python-wheel))
(propagated-inputs (list python-asdf-standard python-importlib-resources))
(home-page "https://asdf-unit-schemas.readthedocs.io/";)
(synopsis "ASDF serialization schemas for the units defined by
@code{astropy.units}")
@@ -3903,9 +3931,10 @@ orbit around the Earth.")
(base32
"0x6p5z6a2cqinckwlpinjxagvmswl149s1jn6ihmdxk4k0h8rrz0"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-numpy python-scipy))
+ (propagated-inputs (list python-numpy python-scipy python-setuptools))
(native-inputs (list python-codecov python-pytest python-pytest-cov
- python-pytest-doctestplus python-setuptools-scm))
+ python-pytest-doctestplus python-setuptools-scm
+ python-wheel))
(home-page "https://github.com/spacetelescope/wiimatch";)
(synopsis
"Optimal matching of weighted N-dimensional image intensity data")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d1448e390f..e6ba3e561a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1401,7 +1401,8 @@ intended to behave exactly the same as the original BWK
awk.")
(base32
"1pm1szyxabhn8jismrj9cjhf88ajgcmm39f0cgf36iagw5qakprl"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-biopython python-six))
+ (propagated-inputs (list python-biopython python-six python-setuptools
+ python-wheel))
(native-inputs (list python-pytest))
(home-page "https://github.com/chapmanb/bcbb/tree/master/gff";)
(synopsis "Read and write GFF files with Biopython integration")
@@ -1526,7 +1527,7 @@ from bokeh.util.dataclasses import entries\n"))
python-tornado-6
python-tqdm
python-umap-learn))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/LooseLab/bulkVis";)
(synopsis "Interactive visualization of bulk RNA-seq data")
(description
@@ -1765,7 +1766,8 @@ biological activities from omics data within a unified
framework.")
python-scikit-learn
python-scipy
python-seaborn))
- (native-inputs (list python-cython python-setuptools-scm))
+ (native-inputs (list python-cython python-setuptools-scm
+ python-setuptools python-wheel))
(home-page "https://github.com/lilab-bcb/demuxEM";)
(synopsis "Analyze cell-hashing/nucleus-hashing data")
(description
@@ -1838,6 +1840,7 @@ from single-cell RNA-sequencing.")
python-numpy
python-pandas
python-scipy))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/SegataLab/hclust2/";)
(synopsis "Plotting heat-maps for publications")
(description
@@ -1857,7 +1860,7 @@ to produce high quality figures that can be used in
publications.")
"111q4pzkav26aa3hkgh948wqlyrq7dq6sjml9z63n3blw8s6b0c4"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-setuptools-scm))
+ (list python-setuptools-scm python-setuptools python-wheel))
(propagated-inputs
(list python-humanize python-requests python-six))
(home-page "https://pypi.org/project/htsget/";)
@@ -1935,6 +1938,7 @@ framework enables the use of any LR method with any
resources.")
(build-system pyproject-build-system)
(propagated-inputs
(list python-matplotlib python-numpy python-pandas))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://logomaker.readthedocs.io";)
(synopsis "Package for making Sequence Logos")
(description "Logomaker is a Python package for generating
@@ -1968,7 +1972,8 @@ multi-panel figures.")
python-pillow
python-scipy
python-zarr))
- (native-inputs (list python-cython python-setuptools-scm))
+ (native-inputs (list python-cython python-setuptools-scm
+ python-setuptools python-wheel))
(home-page "https://github.com/lilab-bcb/pegasusio";)
(synopsis "Read or write single-cell genomics data")
(description
@@ -2027,7 +2032,7 @@ weight.astype(\"str\") + '\\n')")))))))
python-scikit-learn
python-scipy))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/dpeerlab/PhenoGraph.git";)
(synopsis "Graph-based clustering for high-dimensional single-cell data")
(description
@@ -2058,6 +2063,7 @@ similarities between cells and then identifying
communities in this graph.")
python-numpy
python-pandas
python-seaborn))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/biobakery/phylophlan";)
(synopsis
"Phylogenetic analysis of microbial isolates and genomes from
metagenomes")
@@ -2137,6 +2143,8 @@ phylogenetic markers, and can also scale to very large
phylogenies comprising
python-cython
kentutils ; for bedGraphToBigWig
python-six
+ python-setuptools
+ python-wheel
;; For the test suite.
python-pytest
python-psutil))
@@ -2330,6 +2338,7 @@ alignments and perform the following operations:
"15m6ffks4zwpp1ycwk6n02py6mw2yh7qr0vhpc178b91gldr97ia"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-pandas))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/alexomics/read-paf";)
(synopsis "Minimap2 PAF file reader")
(description
@@ -2442,6 +2451,7 @@ sequencing.")
(lambda _ (setenv "HOME" "/tmp"))))))
(propagated-inputs
(list python-numpy))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://biopython.org/";)
(synopsis "Tools for biological computation in Python")
(description
@@ -3494,7 +3504,8 @@ off-target reads for a capture method that targets
CpG-rich region.")
(inputs
(list zlib))
(native-inputs
- (list python-cython python-lzo python-pytest))
+ (list python-cython python-lzo python-pytest python-setuptools
+ python-wheel))
(home-page "https://github.com/bxlab/bx-python";)
(synopsis "Tools for manipulating biological data")
(description
@@ -3656,6 +3667,8 @@ has several key features:
(native-inputs
(list python-cython
python-pytest
+ python-setuptools
+ python-wheel
;; Dependencies below are are for tests only.
samtools
bcftools))
@@ -3734,6 +3747,8 @@ UCSC genome browser.")
(native-inputs
`(("python-cython" ,python-cython)
("python-nose" ,python-nose)
+ ("python-setuptools" ,python-setuptools)
+ ("python-wheel" ,python-wheel)
("test-data"
,(origin
(method url-fetch)
@@ -4061,7 +4076,8 @@ file formats including SAM/BAM, Wiggle/BigWig, BED,
GFF/GTF, VCF.")
(arguments
(list #:tests? #false)) ;there are none
(native-inputs
- (list python-cython python-pytest python-setuptools-scm))
+ (list python-cython python-pytest python-setuptools-scm
+ python-setuptools python-wheel))
(propagated-inputs
(list python-xopen))
(home-page "https://github.com/marcelm/dnaio/";)
@@ -4239,6 +4255,7 @@ files.")
(list python-numpy))
(inputs
(list libbigwig zlib curl))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/dpryan79/pyBigWig";)
(synopsis "Access bigWig files in Python using libBigWig")
(description
@@ -4277,9 +4294,11 @@ accessing bigWig files.")
python-rdflib-jsonld
python-requests
python-ruamel.yaml
+ python-setuptools ; For pkg_resources.
python-typing-extensions))
(native-inputs
- (list python-black python-pytest python-pytest-runner))
+ (list python-black python-pytest python-pytest-runner
+ python-wheel))
(home-page "https://github.com/common-workflow-language/schema_salad";)
(synopsis "Schema Annotations for Linked Avro Data (SALAD)")
(description
@@ -4380,6 +4399,7 @@ resources for bioinformatics.")
python-scikit-learn
python-scipy
python-umap-learn))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/swolock/scrublet";)
(synopsis "Tool to indentify and remove doublets in single-cell data")
(description "This package provides a tool for identifying and removing
@@ -4456,6 +4476,7 @@ doublets in single-cell RNA-seq data.")
python-requests
python-ruamel.yaml
python-schema-salad
+ python-setuptools ; For pkg_resources.
python-shellescape
python-typing-extensions
;; Not listed as needed but still necessary:
@@ -4467,7 +4488,8 @@ doublets in single-cell RNA-seq data.")
python-pytest
python-pytest-cov
python-pytest-mock
- python-pytest-runner))
+ python-pytest-runner
+ python-wheel))
(home-page
"https://github.com/common-workflow-language/common-workflow-language";)
(synopsis "Common Workflow Language reference implementation")
@@ -4521,7 +4543,8 @@ CWL descriptions.")
(substitute* "tests/test_datamodel_taxon.py"
(("collections.Iterable")
"collections.abc.Iterable")))))))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-wheel))
+ (propagated-inputs (list python-setuptools))
(home-page "https://dendropy.org/";)
(synopsis "Library for phylogenetics and phylogenetic computing")
(description
@@ -5115,7 +5138,8 @@ multiple DJU methods.")
(base32
"0cjpzyqz6r4lmiwry2gcxdczwpkhl3lyyjg4s8addln17691ysxk"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-pytest))
+ (propagated-inputs (list python-pytest python-setuptools))
+ (native-inputs (list python-wheel))
(home-page "https://github.com/betteridiot/bamnostic/";)
(synopsis "Tool for binary alignment map, random access and parsing")
(description
@@ -5213,7 +5237,7 @@ analysis tool Scanpy (Genome Biology, 2018).")
python-pyqt
python-scipy))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "http://etetoolkit.org";)
(synopsis "Python environment for phylogenetic tree exploration")
(description
@@ -5234,6 +5258,7 @@ exploration.")
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;there are none
(propagated-inputs (list python-matplotlib python-numpy
python-levenshtein))
+ (native-inputs (list python-setuptools python-wheel python-pip))
(home-page "https://github.com/meren/illumina-utils";)
(synopsis "Library and scripts to work with Illumina paired-end data")
(description
@@ -5255,6 +5280,7 @@ Illumina paired-end data (for CASAVA 1.8+).")
(propagated-inputs
(list python-biopython python-matplotlib python-pandas
python-scipy python-seaborn))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://widdowquinn.github.io/pyani/";)
(synopsis "Calculate genome-scale average nucleotide identity")
(description
@@ -8607,7 +8633,9 @@ complexity samples.")
(build-system pyproject-build-system)
(native-inputs
(list python-pytest-cov
- python-pytest-runner))
+ python-pytest-runner
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/dib-lab/screed/";)
(synopsis "Short read sequence database utilities")
(description "Screed parses FASTA and FASTQ files and generates databases.
@@ -8949,7 +8977,7 @@ bioinformatics file formats, sequence alignment, and
more.")
(inputs
(list python-biopython python-pygtrie))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/fhcrc/seqmagick";)
(synopsis "Tools for converting and modifying sequence files")
(description
@@ -11672,10 +11700,12 @@ replacement for strverscmp.")
python-requests
python-rich
python-rich-click
+ python-setuptools ; For pkg_resources.
python-simplejson
python-spectra))
(native-inputs
`(("python-pytest" ,python-pytest)
+ ("python-wheel" ,python-wheel)
("tests"
,(let ((commit "c3e7400affe3f3ca996973805797af61b93070ba"))
(origin
@@ -13301,9 +13331,10 @@ using the same syntax.")
python-pydot
python-requests
python-scipy
+ python-setuptools
python-statsmodels
python-xlsxwriter))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-wheel))
(home-page "https://github.com/tanghaibao/goatools";)
(synopsis "Python scripts to find enrichment of GO terms")
(description "Python scripts to find enrichment of GO terms. In addition,
@@ -13419,9 +13450,10 @@ API services.")
python-pysam
python-regex
python-ruamel.yaml
+ python-setuptools
snakemake))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-wheel))
(home-page "https://github.com/caleblareau/mgatk";)
(synopsis "Mitochondrial genome analysis toolkit.")
(description "This package is a Python-based command line interface for
@@ -15658,6 +15690,7 @@ implementation differs in these ways:
python-patsy
python-scikit-learn
python-scipy
+ python-setuptools ; For pkg_resources.
python-seaborn
python-session-info
python-sinfo
@@ -16008,7 +16041,9 @@ bgzipped text file that contains a pair of genomic
coordinates per line.")
python-mock
python-numpy
python-pytest
- python-pytest-cov))
+ python-pytest-cov
+ python-wheel))
+ (propagated-inputs (list python-setuptools))
(home-page "http://mattshirley.com";)
(synopsis "Random access to fasta subsequences")
(description
@@ -16174,7 +16209,7 @@ includes operations like compartment, insulation or
peak calling.")
python-scipy
python-tables))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/deeptools/HiCMatrix/";)
(synopsis "HiCMatrix class for HiCExplorer and pyGenomeTracks")
(description
@@ -17038,6 +17073,7 @@ polymorphisms) and indels with respect to a reference
genome and more.")
python-scipy
;; R packages
r-dnacopy))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://cnvkit.readthedocs.org/";)
(synopsis "Copy number variant detection from targeted DNA sequencing")
(description
@@ -19146,7 +19182,9 @@ coordinates between different assemblies.")
(list python-pytest
lsof
inetutils
- openssl))
+ openssl
+ python-setuptools
+ python-wheel))
(inputs (list time))
(propagated-inputs
(list python-apsw
@@ -19647,6 +19685,7 @@ feature is fast retrieval of range queries into numpy
arrays.")
(list python-biopython
python-matplotlib
python-packaging))
+ (native-inputs (list python-setuptools python-wheel))
(home-page
"https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer";)
(synopsis "Plot features from DNA sequences")
diff --git a/gnu/packages/bootloaders.scm b/gnu/packages/bootloaders.scm
index 069d02b52c..ec8cddbd16 100644
--- a/gnu/packages/bootloaders.scm
+++ b/gnu/packages/bootloaders.scm
@@ -69,6 +69,7 @@
#:use-module (gnu packages valgrind)
#:use-module (gnu packages virtualization)
#:use-module (gnu packages xorg)
+ #:use-module (gnu packages python-build)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
#:use-module (guix build-system gnu)
@@ -676,6 +677,8 @@ tree binary files. These are board description files used
by Linux and BSD.")
pkg-config ;for 'make menuconfig'
python
python-pyelftools
+ python-setuptools
+ python-wheel
swig
(list util-linux "lib")))
(home-page "https://www.denx.de/wiki/U-Boot/";)
diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm
index 71dc9eb54b..691fe67605 100644
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@ -833,7 +833,7 @@ has been designed to be fast, light and unintrusive.")
(base32
"0gymjcnvjx9snyrzdbmjnk93ibb161q72xam29vnl3yyac4r1330"))))
(build-system pyproject-build-system)
- (native-inputs (list python-nose))
+ (native-inputs (list python-nose python-setuptools python-wheel))
(propagated-inputs
(list python-cached-property python-configargparse
python-jinja2 python-six
@@ -1705,7 +1705,8 @@ timeout has been exceeded.")
;; 'hypothesis' plugin is not in the environment (due to
;; <http://issues.guix.gnu.org/25235>), which would cause the test suite
;; to fail (see: https://github.com/pytest-dev/pytest-forked/issues/54).
- (list python-pytest-bootstrap python-setuptools-scm))
+ (list python-pytest-bootstrap python-setuptools
+ python-setuptools-scm python-wheel))
(home-page "https://github.com/pytest-dev/pytest-forked";)
(synopsis "Pytest plugin to run tests in isolated forked subprocesses")
(description "This package provides a Pytest plugin which enables running
@@ -2030,7 +2031,7 @@ executed.")
(lambda _
(setenv "SETUPTOOLS_SCM_PRETEND_VERSION"
#$(package-version this-package)))))))
- (native-inputs (list python-setuptools-scm))
+ (native-inputs (list python-setuptools-scm python-setuptools python-wheel))
(propagated-inputs (list python-pytest))
(home-page "https://github.com/pytest-dev/pytest-asyncio";)
(synopsis "Pytest support for asyncio")
@@ -2467,7 +2468,9 @@ a Pytest test execution.")
python-mypy
python-pytest
python-pyyaml
+ python-setuptools
python-regex))
+ (native-inputs (list python-wheel))
(home-page "https://github.com/TypedDjango/pytest-mypy-plugins";)
(synopsis "Pytest plugin for writing tests for mypy plugins")
(description "This package provides a pytest plugin for writing tests for
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 762d8bd402..bdaa84f00a 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -3062,6 +3062,7 @@ protocol with Cython for performance.")
(build-system pyproject-build-system)
(arguments '(#:tests? #f)) ;test suite requires docker
(propagated-inputs (list python-pymysql))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/aio-libs/aiomysql";)
(synopsis "MySQL driver for Python")
(description "@code{aiomysql} is a driver for accessing a MySQL database
@@ -3452,7 +3453,8 @@ on localhost.")
(build-system pyproject-build-system)
(native-inputs
(list python-cython ; for C extensions
- python-pytest python-mock python-pytest-xdist)) ; for tests
+ python-pytest python-mock python-pytest-xdist ; for tests
+ python-setuptools python-wheel))
(propagated-inputs
(list python-greenlet))
(arguments
@@ -3646,7 +3648,7 @@ text search extension.")
(propagated-inputs (list python-click python-click-default-group
python-dateutil python-sqlite-fts4
python-tabulate))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/simonw/sqlite-utils";)
(synopsis
"CLI tool and Python utility functions for manipulating SQLite databases")
@@ -3719,7 +3721,7 @@ PickleShare.")
"02sgja00azvd08wi2wm105apmhp2644s7aw9b1zdg3dkcwjnsiad"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-cython unzip))
+ (list python-cython unzip python-setuptools python-wheel))
(inputs (list sqlite-next)) ;SQLite 3.40 required.
(arguments
(list
@@ -4039,7 +4041,7 @@ for Python. The design goals are:
;; The fix was forwarded upstream, see:
;; https://github.com/redis/hiredis-py/pull/160.
(delete-file "tests/__init__.py"))))))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(inputs (list hiredis))
(home-page "https://github.com/redis/hiredis-py";)
(synopsis "Python extension that wraps protocol parsing code in hiredis")
@@ -4131,6 +4133,8 @@ reasonable substitute.")
(list python-pytest
python-pytest-asyncio
python-pytest-timeout
+ python-setuptools
+ python-wheel
redis))
(propagated-inputs
(list python-async-timeout))
diff --git a/gnu/packages/digest.scm b/gnu/packages/digest.scm
index 481771804b..e478f43b77 100644
--- a/gnu/packages/digest.scm
+++ b/gnu/packages/digest.scm
@@ -123,7 +123,7 @@ platforms (both big and little endian).")
"1hdxcscry59gh0znlm71ya23mm9rfmvz8lvvlplzxzf63pib28dc"))))
(build-system pyproject-build-system)
;; Needed to embed the correct version string
- (native-inputs (list python-setuptools-scm))
+ (native-inputs (list python-setuptools-scm python-setuptools python-wheel))
(home-page "https://github.com/ifduyue/python-xxhash";)
(synopsis "Python binding for xxHash")
(description "This package provides Python bindings for the xxHash hash
diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm
index 88f541d2e9..11b85508ec 100644
--- a/gnu/packages/engineering.scm
+++ b/gnu/packages/engineering.scm
@@ -2530,7 +2530,7 @@ specification can be downloaded at
@url{http://3mf.io/specification/}.";)
(substitute* "pyvisa/shell.py"
(("from .thirdparty import prettytable")
"import prettytable")))))))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(propagated-inputs (list python-dataclasses python-prettytable
python-typing-extensions))
(home-page "https://pyvisa.readthedocs.io/en/latest/";)
diff --git a/gnu/packages/fontutils.scm b/gnu/packages/fontutils.scm
index 153602b4b4..7b0123b6cb 100644
--- a/gnu/packages/fontutils.scm
+++ b/gnu/packages/fontutils.scm
@@ -491,7 +491,8 @@ converts any cubic curves to quadratic. The most useful
function is probably
(sha256
(base32 "1rg2997af8blvswlwif0kpz2vxrlh555gzqslz6yv9y7i7v8lphl"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest python-setuptools-scm))
+ (native-inputs (list python-pytest python-setuptools-scm
+ python-setuptools python-wheel))
(propagated-inputs
(list python-booleanoperations
python-cffsubr
@@ -638,7 +639,8 @@ process. FontParts is the successor of RoboFab.")
"--ignore=tests/builder/interpolation_test.py")))
(native-inputs
(list python-setuptools-scm
-
+ python-setuptools
+ python-wheel
;; For tests.
python-pytest
python-xmldiff))
@@ -809,6 +811,7 @@ suite of the @code{psautohint} package.")
python-pytest-cov
python-pytest-xdist
python-setuptools-scm
+ python-setuptools
python-wheel))
(home-page "https://github.com/adobe-type-tools/psautohint";)
(synopsis "Adobe's PostScript autohinter")
@@ -1693,7 +1696,7 @@ with @samp{nameIDs}.")
(base32 "0yx4i8q5rfyqhr2fj70a7z1bp1jv7bdlr64ww9z4nv9ycbda4x9j"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest python-setuptools-scm))
+ (list python-pytest python-setuptools-scm python-setuptools python-wheel))
(propagated-inputs (list python-attrs python-fonttools))
(home-page "https://github.com/fonttools/ufoLib2";)
(synopsis "Unified Font Object (UFO) font processing library")
diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm
index cce4f2518d..78d683d9e4 100644
--- a/gnu/packages/geo.scm
+++ b/gnu/packages/geo.scm
@@ -351,7 +351,9 @@ subdivisions.")
python-numpy
python-pytest
python-scikit-build
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(inputs (list h3))
(home-page "https://uber.github.io/h3-py";)
(synopsis "Python bindings for H3")
@@ -959,7 +961,7 @@ pyproj, Rtree, and Shapely.")
(list python-fiona python-packaging python-pandas python-pyproj
python-shapely))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://geopandas.org";)
(synopsis "Geographic pandas extensions")
(description "The goal of GeoPandas is to make working with
@@ -1014,7 +1016,7 @@ require a spatial database such as PostGIS.")
python-rtree
python-shapely))
(native-inputs
- (list python-numpy python-pytest))
+ (list python-numpy python-pytest python-setuptools python-wheel))
(home-page "https://github.com/gboeing/osmnx";)
(synopsis
"Retrieve, model, analyze, and visualize OpenStreetMap street networks")
@@ -1801,7 +1803,7 @@ persisted.
(string-append "\"" libspatialindex
"/lib/libspatialindex_c.so\"")))))))))
(native-inputs
- (list python-numpy python-pytest python-wheel))
+ (list python-numpy python-pytest python-setuptools python-wheel))
(inputs
(list libspatialindex))
(home-page "https://github.com/Toblerity/rtree";)
diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm
index 5510828edf..013ef1a193 100644
--- a/gnu/packages/graph.scm
+++ b/gnu/packages/graph.scm
@@ -185,7 +185,7 @@ more.")
(string-append igraph "/lib")))))))))))
(inputs (list igraph))
(propagated-inputs (list python-texttable))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://igraph.org/python/";)
(synopsis "Python bindings for the igraph network analysis library"))))
@@ -353,11 +353,12 @@ algorithm for community detection in large networks.")
(("self.use_pkgconfig = False")
"self.use_pkgconfig = True")))))))
(inputs (list igraph))
- (propagated-inputs (list python-igraph))
+ (propagated-inputs (list python-igraph python-setuptools))
(native-inputs
(list pkg-config
python-ddt
- python-setuptools-scm))
+ python-setuptools-scm
+ python-wheel))
(home-page "https://github.com/vtraag/louvain";)
(synopsis "Community detection in large networks")
(description
diff --git a/gnu/packages/graphviz.scm b/gnu/packages/graphviz.scm
index b91c365e3c..9ba62f9e07 100644
--- a/gnu/packages/graphviz.scm
+++ b/gnu/packages/graphviz.scm
@@ -156,7 +156,9 @@ interfaces for other technical domains.")
python-mock
python-pytest
python-pytest-cov
- python-pytest-mock))
+ python-pytest-mock
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/xflr6/graphviz";)
(synopsis "Simple Python interface for Graphviz")
(description
diff --git a/gnu/packages/license.scm b/gnu/packages/license.scm
index ca8375d19d..3a10bf3293 100644
--- a/gnu/packages/license.scm
+++ b/gnu/packages/license.scm
@@ -179,13 +179,14 @@ belonging to various licenses.")
(base32 "0ij2mpdnawjabnsy291157wzci9050dfclwib95phg7pnmd6xsw0"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-poetry-core python-pytest))
+ (list python-poetry-core python-pytest python-wheel))
(inputs
(list python-binaryornot
python-boolean.py
python-debian
python-jinja2
- python-license-expression))
+ python-license-expression
+ python-setuptools)) ; For pkg_resources.
(home-page "https://reuse.software/";)
(synopsis "Provide and verify copyright and licensing information")
(description
diff --git a/gnu/packages/machine-learning.scm
b/gnu/packages/machine-learning.scm
index 3923573d57..0532083b02 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -745,7 +745,7 @@ and not test_wmt22_references")
python-portalocker
python-regex
python-tabulate))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/mjpost/sacrebleu";)
(synopsis
"Compute shareable, comparable, and reproducible BLEU, chrF, and TER
scores")
@@ -786,7 +786,7 @@ unsupervised text tokenizer.")
(build-system pyproject-build-system)
;; This package depends on spacy, which depends on this package.
(arguments (list #:tests? #false))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://spacy.io";)
(synopsis "Legacy registered functions for spaCy backwards compatibility")
(description
@@ -807,7 +807,7 @@ compatibility.")
(build-system pyproject-build-system)
;; This package depends on spacy, which depends on this package.
(arguments (list #:tests? #false))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/explosion/spacy-loggers";)
(synopsis "Logging utilities for SpaCy")
(description "This package provides logging utilities for the SpaCy
@@ -1548,7 +1548,7 @@ for scientific computing and data science (e.g. BLAS and
OpenMP).")
python-scikit-learn
tensorflow
python-wheel))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/tslearn-team/tslearn";)
(synopsis "Machine learning toolkit for time series data")
(description "This is a Python library for time series data mining.
@@ -1594,7 +1594,9 @@ and forecasting.")
python-mypy
python-pandas
python-pytest
- python-pytest-cov))
+ python-pytest-cov
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/scikit-learn-contrib/imbalanced-learn";)
(synopsis "Toolbox for imbalanced dataset in machine learning")
(description "This is a Python package offering a number of re-sampling
@@ -1737,7 +1739,9 @@ standard feature selection algorithms.")
(native-inputs
(list python-pytest
python-pytorch
- python-torchvision))
+ python-torchvision
+ python-setuptools
+ python-wheel))
(home-page "https://cleanlab.ai";)
(synopsis "Automatically find and fix dataset issues")
(description
@@ -1769,7 +1773,7 @@ data by providing clean labels during training.")
python-scipy
python-tqdm))
(native-inputs
- (list python-pytest))))
+ (list python-pytest python-setuptools python-wheel))))
(define-public python-cma
(package
@@ -1810,7 +1814,7 @@ and a few related numerical optimization tools.")
(base32 "1f3143w8ii6i93bdh65iazrq1lryccd805ndnqww5l8h7qnnzpkm"))
(file-name (git-file-name name version))))
(build-system pyproject-build-system)
- (native-inputs (list python-hypothesis))
+ (native-inputs (list python-hypothesis python-setuptools python-wheel))
(propagated-inputs (list python-numpy))
(home-page "https://github.com/CyberAgentAILab/cmaes";)
(synopsis "CMA-ES implementation for Python")
@@ -1981,13 +1985,15 @@ interactive learning.")
python-networkx
python-numpy
python-scipy
+ python-setuptools ; For pkg_resources.
python-six
python-tqdm))
(native-inputs
(list python-black
python-nose
python-pymongo
- python-pytest))
+ python-pytest
+ python-wheel))
(home-page "https://hyperopt.github.io/hyperopt/";)
(synopsis "Library for hyperparameter optimization")
(description "Hyperopt is a Python library for serial and parallel
@@ -3537,7 +3543,8 @@ These include a barrier, broadcast, and allreduce.")
;; nor is examples/plot_quantum.py
" and not test_file_is_generated"))))
(propagated-inputs (list python-jsmin python-numpy python-scipy))
- (native-inputs (list python-pytest python-pytest-cov python-sphinx))
+ (native-inputs (list python-pytest python-pytest-cov python-sphinx
+ python-setuptools python-wheel))
(home-page "https://github.com/tensorly/tensorly";)
(synopsis "Tensor learning in Python")
(description
@@ -3966,6 +3973,7 @@ as torchvision, torchtext, and others.")
(lambda _
(delete-file "readchar/_win_read.py"))))))
(propagated-inputs (list python-setuptools))
+ (native-inputs (list python-wheel))
(home-page "https://github.com/magmax/python-readchar";)
(synopsis "Library to easily read single chars and key strokes")
(description "This package provides a Python library to easily read single
@@ -4199,7 +4207,7 @@ implementations and an easy-to-use API to create custom
metrics. It offers:
python-pillow-simd
python-pytorch))
(native-inputs
- (list which python-pytest))
+ (list which python-pytest python-setuptools python-wheel))
(home-page "https://pytorch.org/vision/stable/index.html";)
(synopsis "Datasets, transforms and models specific to computer vision")
(description
@@ -4747,7 +4755,7 @@ fi"
;; Required by codegen.
python-setuptools
python-sympy))
- (native-inputs (list python-pytest python-pytest-xdist))
+ (native-inputs (list python-pytest python-pytest-xdist python-wheel))
(home-page "https://briansimulator.org/";)
(synopsis "Clock-driven simulator for spiking neural networks")
(description
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 0d74a2a55c..112e3ee071 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -161,6 +161,7 @@
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages pulseaudio)
#:use-module (gnu packages python)
+ #:use-module (gnu packages python-build)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages qt)
@@ -4823,7 +4824,8 @@ access to BLIS implementations via traditional BLAS
routine calls.")
(invoke "python" "setup.py" "build_ext" "--inplace"
"-j" (number->string (parallel-job-count))))))))
(propagated-inputs (list python-numpy))
- (native-inputs (list python-cython python-pytest))
+ (native-inputs (list python-cython python-pytest
+ python-setuptools python-wheel))
(home-page "https://github.com/explosion/cython-blis";)
(synopsis "Blis as a self-contained C-extension for Python")
(description
diff --git a/gnu/packages/monitoring.scm b/gnu/packages/monitoring.scm
index 3238f11fb4..b979feff06 100644
--- a/gnu/packages/monitoring.scm
+++ b/gnu/packages/monitoring.scm
@@ -326,7 +326,7 @@ solution (server-side)")))
(string-append #$output "/share/doc/"
#$name "/html")))))))
(native-inputs
- (list python-pytest python-sphinx))
+ (list python-pytest python-sphinx python-setuptools python-wheel))
(inputs
(list ncurses python-requests))
(home-page "https://github.com/unioslo/zabbix-cli";)
diff --git a/gnu/packages/package-management.scm
b/gnu/packages/package-management.scm
index dacd4433d2..4aedbd613c 100644
--- a/gnu/packages/package-management.scm
+++ b/gnu/packages/package-management.scm
@@ -963,7 +963,8 @@ and not test_conda_root_outside_root_environment"))
(add-before 'check 'set-HOME
(lambda _ (setenv "HOME" "/tmp"))))))
(propagated-inputs
- (list python-clyent python-nbformat python-pyyaml python-requests))
+ (list python-clyent python-nbformat python-pyyaml python-requests
+ python-setuptools))
(native-inputs
(list python-coverage
python-dateutil
@@ -971,7 +972,8 @@ and not test_conda_root_outside_root_environment"))
python-mock
python-pillow
python-pytest
- python-pytz))
+ python-pytz
+ python-wheel))
(home-page "https://github.com/Anaconda-Platform/anaconda-client";)
(synopsis "Anaconda Cloud command line client library")
(description
diff --git a/gnu/packages/potassco.scm b/gnu/packages/potassco.scm
index e6d7caa1ef..217521f37b 100644
--- a/gnu/packages/potassco.scm
+++ b/gnu/packages/potassco.scm
@@ -341,7 +341,8 @@ Python code.")))
(("self\\.assertTrue\\(os_called\\)" all)
(string-append "# " all))))))))
(propagated-inputs (list python-clingo))
- (native-inputs (list python-typing-extensions))
+ (native-inputs (list python-typing-extensions
+ python-setuptools python-wheel))
(home-page "https://potassco.org";)
(synopsis "Object relational mapping to clingo")
(description "@acronym{Clorm, Clingo ORM} provides an @acronym{ORM,
@@ -366,6 +367,7 @@ into Python programs easier.")
"0g3khxfdzc2hc7dkiyyqhb399h6h21m5wkp6wy8w71n0m32fiy53"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-clingo))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://potassco.org/";)
(synopsis "Solve dynamic temporal logic programs")
(description "This package provides a system to solve dynamic temporal
@@ -393,8 +395,10 @@ logic programs based on clingo.")
python-imageio
python-jinja2
python-jsonschema
- python-networkx))
- (native-inputs (list dot2tex graphviz python-pylint python-pytest))
+ python-networkx
+ python-setuptools))
+ (native-inputs (list dot2tex graphviz python-pylint python-pytest
+ python-wheel))
(home-page "https://github.com/potassco/clingraph";)
(synopsis "Visualizer for graphs defined as logic programs")
(description
diff --git a/gnu/packages/protobuf.scm b/gnu/packages/protobuf.scm
index 8cd805799e..d026809093 100644
--- a/gnu/packages/protobuf.scm
+++ b/gnu/packages/protobuf.scm
@@ -381,7 +381,9 @@ any memory-restricted system.")
(list python-grpc-stubs
python-grpcio-tools
python-pytest
- python-typing-extensions))
+ python-typing-extensions
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list protobuf
python-protobuf
diff --git a/gnu/packages/python-build.scm b/gnu/packages/python-build.scm
index 154c97e9e4..faaffbcea5 100644
--- a/gnu/packages/python-build.scm
+++ b/gnu/packages/python-build.scm
@@ -206,7 +206,7 @@ Python file, so it can be easily copied into your project.")
(build-system pyproject-build-system)
(arguments (list #:build-backend "setuptools.build_meta"
#:tests? #f)) ;keep dependencies to a minimum
- (native-inputs (list python-wheel))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/pypa/trove-classifiers";)
(synopsis "Canonical source for classifiers on PyPI")
(description "This package is the canonical source for classifiers use on
@@ -588,6 +588,7 @@ specified by PEP 517, @code{flit_core.buildapi}.")
;; builder instead.
#:build-backend "setuptools.build_meta"))
(propagated-inputs (list python-flit-core python-setuptools-scm
python-tomli))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://gitlab.com/WillDaSilva/flit_scm";)
(synopsis "PEP 518 build backend combining flit_core and setuptools_scm")
(description "This package provides a PEP 518 build backend that uses
diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index 87e15b4560..92289cb164 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -586,7 +586,9 @@ are too large to conveniently hard-code them in the tests.")
" and not test_remote_data_requires"
" and not test_remote_data_ignore_warnings"))))
(native-inputs
- (list python-numpy python-pytest python-setuptools-scm))
+ (list python-numpy python-pytest python-setuptools python-setuptools-scm
+ python-wheel))
+ (propagated-inputs (list python-setuptools)) ;; for pkg_resources
(home-page "https://github.com/astropy/pytest-doctestplus";)
(synopsis "Pytest plugin with advanced doctest features")
(description
@@ -636,7 +638,9 @@ for interactively selecting and running Pytest tests.")
(list python-pytest
python-pytest-cov
python-pytest-doctestplus
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/astropy/pytest-filter-subpackage";)
(synopsis "Pytest plugin for filtering based on sub-packages")
(description
@@ -749,7 +753,8 @@ were inadvertently left open at the end of a unit test.")
"not test_default_behavior"
" and not test_strict_with_decorator"))))
(native-inputs
- (list python-pytest python-setuptools-scm))
+ (list python-pytest python-setuptools python-setuptools-scm
+ python-wheel))
(propagated-inputs
(list python-packaging))
(home-page "https://github.com/astropy/pytest-remotedata";)
@@ -843,7 +848,9 @@ framework and makes it easy to undo any monkey patching.
The fixtures are:
(list
#:test-flags #~(list "-m" "mpl_image_compare")))
(native-inputs
- (list python-pytest))
+ (list python-pytest
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-jinja2
python-matplotlib
@@ -1770,7 +1777,8 @@ the implementation of that name.")
(("def test_memory_profiler")
"def __off_test_memory_profiler")))))))
(native-inputs
- (list python-pytest python-pytest-fixture-config python-safety))
+ (list python-pytest python-pytest-fixture-config python-safety
+ python-setuptools python-wheel))
(propagated-inputs (list python-psutil))
(home-page "https://github.com/pythonprofilers/memory_profiler";)
(synopsis "Memory profiler for Python")
@@ -2178,7 +2186,7 @@ tests at one time.")
(native-inputs
(list python-pbr python-ddt python-pytest))
(propagated-inputs
- (list python-aiohttp))
+ (list python-aiohttp python-setuptools))
(home-page "https://github.com/pnuckowski/aioresponses";)
(synopsis "Mock out requests made by ClientSession from aiohttp package")
(description
@@ -2390,7 +2398,9 @@ which make writing and running functional and integration
tests easier.")
(native-inputs
(list python-jinja2
python-pytest
- python-tox))
+ python-tox
+ python-setuptools
+ python-wheel))
(home-page "https://nox.thea.codes/";)
(synopsis "Flexible test automation")
(description
@@ -2544,7 +2554,8 @@ parametrize. This plugin allows you to use all four.")
(base32 "1ncpd74hmsz4sadvjg99fnfscxpgh3mc2siini0dhxzwgwdkk5i7"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-httpx))
- (native-inputs (list python-pytest python-pytest-asyncio))
+ (native-inputs (list python-pytest python-pytest-asyncio python-setuptools
+ python-wheel))
(home-page "https://colin-b.github.io/pytest_httpx/";)
(synopsis "Pytest plugin to mock httpx")
(description "This package provides a pytest fixture to mock httpx
@@ -2621,7 +2632,8 @@ running acceptance tests on headless servers.")
;; skip test that uses python-pint
;; pint has many dependencies
"not test_whitelists_with_python")))))))
- (native-inputs (list python-pytest python-pytest-cov))
+ (native-inputs (list python-pytest python-pytest-cov
+ python-setuptools python-wheel))
(propagated-inputs (list python-toml))
(home-page "https://github.com/jendrikseipp/vulture";)
(synopsis "Find dead Python code")
diff --git a/gnu/packages/python-compression.scm
b/gnu/packages/python-compression.scm
index 000d42524d..9d8ea8b156 100644
--- a/gnu/packages/python-compression.scm
+++ b/gnu/packages/python-compression.scm
@@ -64,7 +64,9 @@
python-hypothesis
python-pyannotate
python-pytest
- python-pytest-cov))
+ python-pytest-cov
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/miurahr/multivolume";)
(synopsis "Treat multiple files as one")
(description "MultiVolumefile is a Python library that provides a
@@ -89,7 +91,9 @@ were a single file.")
python-hypothesis
python-pytest
python-pytest-cov
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://codeberg.org/miurahr/pybcj";)
(synopsis "BCJ filter library")
(description "In data compression, BCJ, short for Branch-Call-Jump, refers
@@ -149,6 +153,7 @@ Jump conversion filter by CFFI for Python.")
(setenv "USE_SHARED_BROTLI" "1"))))))
(propagated-inputs (list python-cffi))
(inputs (list brotli))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/python-hyper/brotlicffi";)
(synopsis "Python CFFI bindings to the Brotli library")
(description "This package provides Python CFFI bindings to the Brotli
@@ -170,7 +175,9 @@ library.")
(native-inputs
(list python-pyannotate
python-pytest
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://pypi.org/project/inflate64/";)
(synopsis "deflate64 compression/decompression library")
(description "The @code{inflate64} package provides @code{Deflater} and
@@ -199,7 +206,7 @@ compression algorithm.")
(add-after 'unpack 'use-dynamic-linking
(lambda _ (setenv "PYTHON_ISAL_LINK_DYNAMIC" "1"))))))
(inputs (list isa-l))
- (native-inputs (list python-cython))
+ (native-inputs (list python-cython python-setuptools python-wheel))
(home-page "https://github.com/pycompression/python-isal";)
(synopsis "Python bindings for the ISA-L compression library")
(description
@@ -225,7 +232,9 @@ and decompression by implementing Python bindings for the
ISA-L library.")
python-pytest-benchmark
python-pytest-cov
python-pytest-timeout
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/miurahr/pyppmd";)
(synopsis "PPMd compression/decompression library")
(description "Pyppmd provides classes and functions for compressing and
@@ -287,6 +296,7 @@ several possible methods.")
python-texttable))
(native-inputs
(list python-setuptools
+ python-wheel
python-setuptools-scm
python-coverage
python-coveralls
diff --git a/gnu/packages/python-crypto.scm b/gnu/packages/python-crypto.scm
index 44babe5c8c..fb4cc63097 100644
--- a/gnu/packages/python-crypto.scm
+++ b/gnu/packages/python-crypto.scm
@@ -298,7 +298,9 @@ do what is needed for client/server Kerberos authentication
based on
(native-inputs
(list python-toml
python-pytest
- python-setuptools-scm))
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(propagated-inputs
(list python-importlib-metadata
python-jaraco-classes
@@ -530,7 +532,9 @@ is used by the Requests library to verify HTTPS requests.")
python-pretend
python-pytest ;for subtests
python-pytest-benchmark
- python-pytest-subtests))
+ python-pytest-subtests
+ python-setuptools
+ python-wheel))
(inputs (list python-cryptography-rust))
(propagated-inputs (list python-cffi))
(home-page "https://github.com/pyca/cryptography";)
@@ -1038,7 +1042,7 @@ provides drop-in compatibility with PyCrypto.")))
;; certificates.
#:tests? #f))
(inputs (list openssl))
- (native-inputs (list swig))
+ (native-inputs (list swig python-setuptools python-wheel))
(home-page "https://gitlab.com/m2crypto/m2crypto";)
(synopsis "Python crypto and TLS toolkit")
(description "@code{M2Crypto} is a complete Python wrapper for OpenSSL
@@ -1218,7 +1222,8 @@ derivation function.")
(base32
"0d4x84crbz0a17d8gi90z6zlxwm9pslc65rx0cdw2797ra360v3f"))))
(build-system pyproject-build-system)
- (native-inputs (list python-idna python-pytest))
+ (native-inputs (list python-idna python-pytest python-setuptools
+ python-wheel))
(propagated-inputs (list python-attrs python-cryptography python-pyasn1
python-pyasn1-modules python-six))
(home-page "https://service-identity.readthedocs.io/";)
@@ -1449,6 +1454,8 @@ items and collections, editing items, locking and
unlocking collections
python-pytest
python-pytest-cov
python-service-identity
+ python-setuptools
+ python-wheel
python-zipp))
(propagated-inputs
(list python-cryptography
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 86ba4209fd..538a3c2f0e 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -191,9 +191,12 @@ routines such as routines for numerical integration and
optimization.")
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
(propagated-inputs
(list python-dask
- python-numpy))
+ python-numpy
+ python-click))
(native-inputs
(list python-cython
+ python-setuptools
+ python-wheel
;; The following are all needed for the tests
htslib
python-h5py
@@ -340,7 +343,7 @@ logic, also known as grey logic.")
python-scikit-learn
python-scipy))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://scikit-optimize.github.io/";)
(synopsis "Sequential model-based optimization toolbox")
(description "Scikit-Optimize, or @code{skopt}, is a simple and efficient
@@ -743,7 +746,7 @@ multiple deep learning frameworks.")
"1339fz5gxkizq02h6vn19546x9p4c3nd9ipzpcg39h7gwhg26yi6"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-setuptools-scm python-pytest))
+ (list python-setuptools python-setuptools-scm python-pytest python-wheel))
(propagated-inputs
(list python-numpy python-pandas))
(home-page "https://github.com/pydata/xarray";)
@@ -840,7 +843,8 @@ parentdir_prefix = pytensor-
"--ignore" "tests/tensor/"
"--ignore" "tests/sandbox/"
"--ignore" "tests/sparse/sandbox/")))))))
- (native-inputs (list python-cython python-pytest python-versioneer))
+ (native-inputs (list python-cython python-pytest python-versioneer
+ python-setuptools python-wheel))
(propagated-inputs (list python-cons
python-etuples
python-filelock
@@ -1585,7 +1589,9 @@ aggregated sum and more.")
python-mock
python-pandas
python-pytest python-pytest-cov
- tzdata-for-tests))
+ tzdata-for-tests
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/has2k1/plotnine";)
(synopsis "Grammar of Graphics for Python")
(description
@@ -2035,7 +2041,8 @@ NeuroML2 models.")
"0mrm4rd6x1sm6hkvhk20mkqp9q53sl3lbvq6hqzyymkw1iqq6bhy"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-lxml python-six))
- (native-inputs (list python-pytest python-numpy python-tables))
+ (native-inputs (list python-pytest python-numpy python-tables
+ python-setuptools python-wheel))
(home-page "https://libneuroml.readthedocs.org/en/latest/";)
(synopsis
"Python library for working with NeuroML descriptions of neuronal models")
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 17c9563cfd..1389a15934 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -304,7 +304,8 @@ by calling @code{FrozenList.freeze}.")
(build-system pyproject-build-system)
(arguments (list #:test-flags #~(list "tests")))
(propagated-inputs (list python-frozenlist))
- (native-inputs (list python-pytest python-pytest-asyncio
python-pytest-cov))
+ (native-inputs (list python-pytest python-pytest-asyncio python-pytest-cov
+ python-setuptools python-wheel))
(home-page "https://github.com/aio-libs/aiosignal";)
(synopsis "Callback manager for Python @code{asyncio} projects")
(description "This Python module provides @code{Signal}, an abstraction to
@@ -601,7 +602,9 @@ WSGI. This package includes libraries for implementing
ASGI servers.")
python-httpx
python-pytest
python-pytest-asyncio
- python-starlette))
+ python-starlette
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/simonw/asgi-csrf";)
(synopsis "ASGI middleware for protecting against CSRF attacks")
(description "This Asynchronous Server Gateway Interface (ASGI)
@@ -642,7 +645,9 @@ that is then compared to a @code{csrftoken} hidden form
field or a
(native-inputs (list python-pytest
python-pytest-asyncio
python-pytest-trio
- python-starlette))
+ python-starlette
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-sniffio))
(home-page "https://github.com/florimondmanca/asgi-lifespan";)
(synopsis "Programmatic startup/shutdown of ASGI apps")
@@ -764,7 +769,9 @@ Model} (SAM) templates into AWS CloudFormation templates.")
python-pytest-benchmark
python-requests
python-sqlalchemy
- python-webtest))
+ python-webtest
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-aiohttp
python-botocore
@@ -1101,7 +1108,9 @@ over a different origin than that of the web
application.")
python-pytest-randomly
python-pytest-timeout
python-pytest-xdist
- python-six))
+ python-six
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/httplib2/httplib2";)
(synopsis "Comprehensive HTTP client library")
(description
@@ -1419,7 +1428,7 @@ for use in Python programs that implement HTTP/2.")
(base32 "17b97c56y31hi0n0x0cb5a87x4xr9jijf2y06pzj0977k6zgn6cg"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/python-hyper/h11";)
(synopsis "Pure-Python, bring-your-own-I/O implementation of HTTP/1.1")
(description
@@ -1825,7 +1834,9 @@ is Python’s.")
python-pytest-mock
python-requests-mock
python-setuptools-scm
- python-tox))
+ python-tox
+ python-setuptools
+ python-wheel))
(home-page "https://omnipathdb.org/";)
(synopsis "Python client for the OmniPath web service")
(description "This package provides a Python client for the OmniPath web
@@ -1855,7 +1866,7 @@ service.")
(propagated-inputs (list python-aiohttp python-requests python-tqdm
python-typing-extensions))
(native-inputs (list python-black python-pytest python-pytest-asyncio
- python-pytest-mock))
+ python-pytest-mock python-setuptools python-wheel))
(home-page "https://github.com/openai/openai-python";)
(synopsis "Python client library for the OpenAI API")
(description "This package provides a Python client library for the
@@ -2060,7 +2071,7 @@ for clients and servers.")
"and not encutils "
"and not website.logging")))))))
(native-inputs
- (list python-pytest python-jaraco-test))
+ (list python-pytest python-jaraco-test python-setuptools python-wheel))
(home-page "https://github.com/jaraco/cssutils";)
(synopsis
"CSS Cascading Style Sheets library for Python")
@@ -2243,7 +2254,7 @@ set out in RFC 7540 Section 5.3 (Stream Priority).")
(base32 "0rahm1j9danv1l6i6as80acwv16ycihxkhrvwjiqh9drxhk5ymmd"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(propagated-inputs
(list python-h11))
(home-page "https://github.com/python-hyper/wsproto/";)
@@ -3728,7 +3739,7 @@ presume or force a developer to use a particular tool or
library.")
"178jzz6jxlxllcjqamzh5q7ahfh90m5cl1il9vmjs3xhz65z35pf"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-brotli python-flask))
- (native-inputs (list python-setuptools-scm))
+ (native-inputs (list python-setuptools-scm python-setuptools python-wheel))
(home-page "https://github.com/colour-science/flask-compress";)
(synopsis "Compress responses in a Flask app")
(description
@@ -3751,6 +3762,7 @@ headers required for a compressed response and compresses
the response data.")
(arguments
(list #:tests? #false)) ;there are none
(propagated-inputs (list python-flask))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/maxcountryman/flask-seasurf/";)
(synopsis "CSRF extension for Flask")
(description "SeaSurf is a Flask extension for preventing cross-site
@@ -4182,7 +4194,7 @@ transfers.")
"flask_jwt/__init__.py")
(("access_token.decode\\('utf-8'\\)") "access_token")))))))
(propagated-inputs (list python-flask python-pyjwt))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/mattupstate/flask-jwt";)
(synopsis "JWT token authentication for Flask apps")
(description "This package implements JWT token authentication for Flask
@@ -4209,7 +4221,9 @@ apps.")
(native-inputs
(list python-blinker
python-mock
- python-pytest))
+ python-pytest
+ python-setuptools
+ python-wheel))
(home-page "https://www.github.com/flask-restful/flask-restful/";)
(synopsis "Flask module for creating REST APIs")
(description
@@ -4870,9 +4884,9 @@ available in Django, but is a standalone package.")
(delete-file "tests/test_proxy.py") #t))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest python-nose))
+ (list python-pytest python-wheel))
(propagated-inputs
- (list python-six))
+ (list python-six python-setuptools))
(home-page "https://pythonpaste.readthedocs.io/";)
(synopsis
"Python web development tools, focusing on WSGI")
@@ -5148,6 +5162,7 @@ for httplib2 transport.")
python-wcwidth
python-werkzeug
python-dotenv))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/benbusby/whoogle-search";)
(synopsis "Self-hosted, ad-free, privacy-respecting metasearch engine")
(description
@@ -5989,7 +6004,9 @@ and serve updated contents upon changes to the
directory.")
python-pytest-httpbin
python-pytest-trio
python-uvicorn
- python-trustme))
+ python-setuptools
+ python-trustme
+ python-wheel))
(propagated-inputs
(list python-anyio
python-certifi
@@ -6023,7 +6040,7 @@ Some things HTTP Core does do:
(package/inherit python-httpcore
(name "python-httpcore-bootstrap")
(arguments (list #:tests? #f))
- (native-inputs '()))))
+ (native-inputs (list python-setuptools python-wheel)))))
(define-public python-httpx
(package
@@ -6067,7 +6084,9 @@ Some things HTTP Core does do:
python-trio
python-trio-typing
python-trustme
- python-uvicorn))
+ python-uvicorn
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-charset-normalizer
python-brotli
@@ -6299,7 +6318,7 @@ major web browsers.")
"/include/rapidjson" "'"))
(("if not os.path.isdir.*") "if False:")))))))
(native-inputs
- (list rapidjson python-pytest python-pytz))
+ (list rapidjson python-pytest python-pytz python-setuptools python-wheel))
(home-page "https://github.com/python-rapidjson/python-rapidjson";)
(synopsis "Python wrapper around rapidjson")
(description "This package provides a python wrapper around rapidjson.")
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index b8e8097c7b..eee0e5f744 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -307,7 +307,8 @@ similar XML files, in the same way the @command{diff}
utility does it.")
(base32 "04hnrdcf03g1s0x3sr72sh9gnszz6kyfsl9dg8a4n0zvvhn6z5yz"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest python-pytest-cov python-pytest-asyncio))
+ (list python-pytest python-pytest-cov python-pytest-asyncio
+ python-setuptools python-wheel))
(propagated-inputs (list python-typing-extensions))
(home-page "https://github.com/aio-libs/janus/";)
(synopsis
@@ -579,6 +580,7 @@ and variables you'll need already imported and created.
"12v8l5i35vjbpvh5i4lw29ys6vpr3z7pysyrx33hxaq09zr015mx"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-numpy python-scipy))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/joachimwolff/fit_nbinom";)
(synopsis "Negative binomial maximum likelihood estimator")
(description "This package provides an implementation in Python using
@@ -597,7 +599,8 @@ scipy and numpy of negative binomial maximum likelihood
estimation.")
"0523jrzjj29kxpdllmfhrfj9kysi9mphp2m7ippjkn5b07i1g2pd"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-six))
- (native-inputs (list python-pytest python-pytest-runner))
+ (native-inputs (list python-pytest python-pytest-runner
+ python-setuptools python-wheel))
(home-page "https://github.com/Chilipp/docrep";)
(synopsis "Python package for docstring repetition")
(description "Docrep is the documentation repetition module. This module
@@ -655,6 +658,7 @@ features of the Python's built-in dict.")
"05zf0xn7ab40dan213fwbp1z4rybih8dphf9mzb2ddmbafxq41mv"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-matplotlib python-numpy))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/Phlya/adjustText";)
(synopsis "Adjust text position in matplotlib plots to minimize overlaps")
(description
@@ -772,6 +776,7 @@ git integration, command-line support, and a curses-based
TUI.")
"196ins0m7f90xz5dw764dlx060ziqbcydqzzq40b4ir5858baf3r"))))
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;the tests are not run automatically
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://gitlab.com/dslackw/colored";)
(synopsis "Simple library for color and formatting to terminal")
(description "This is a very simple Python library for color and
@@ -794,7 +799,8 @@ names for 256 color terminal setups.")
(base32 "1fcz5v8b318a3dsdha4c874jsf3wmcw3f25bv2csixclyzacli98"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-coverage python-flake8 python-pytest))
+ (list python-coverage python-flake8 python-pytest python-setuptools
+ python-wheel))
(propagated-inputs
(list python-colorama))
(home-page "http://github.com/timofurrer/colorful";)
@@ -1101,7 +1107,8 @@ Specification v2.0 (PEP 249).")
(base32
"0gxkw607nrd67ck4w8jri9vfrm5g60qvp8b134m8zkiphbxjnx0l"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest python-jinja2 python-pygments))
+ (native-inputs (list python-pytest python-jinja2 python-pygments
+ python-setuptools python-wheel))
(arguments
(list
;; Some tests fail, presumably because of slight version mismatches of
@@ -1202,6 +1209,7 @@ different units.")
"1gpy1z2i4vq1mcrhysxahz4339pbl9rzk58rf5m5gf5ym9xji6ii"))))
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;there are none
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/piccolomo/plotext";)
(synopsis "Plots in the terminal")
(description "Plotext lets you plot directly to the terminal.")
@@ -1331,6 +1339,8 @@ generator MkDocs.")
python-matplotlib
python-pandas
python-poetry-core
+ python-setuptools
+ python-wheel
python-pytest))
(home-page "https://github.com/crflynn/skranger";)
(synopsis "Python bindings for C++ ranger random forests")
@@ -1399,7 +1409,7 @@ threads.")
(build-system pyproject-build-system)
(native-inputs
(list python-setuptools-scm python-tornado-6 python-typeguard
- python-pytest))
+ python-pytest python-setuptools python-wheel))
(home-page "https://github.com/jd/tenacity";)
(synopsis "Retrying library for python")
(description "Tenacity is a general-purpose python library to simplify the
@@ -1527,7 +1537,7 @@ of a loop structure or other iterative computation.")
;; which is patched above.
(delete-file "tests/test_config.py"))))))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(inputs
(list openjpeg ; glymur/lib/openjp2.py
libtiff)) ; glymur/lib/tiff.py
@@ -1796,7 +1806,7 @@ attacks or network discovery.")
python-click-plugins
python-cligj
python-numpy
- python-setuptools
+ python-setuptools ; For pkg_resources.
python-snuggs))
(native-inputs (list gdal
python-boto3
@@ -1805,7 +1815,8 @@ attacks or network discovery.")
python-packaging
python-pytest
python-pytest-cov
- python-shapely))
+ python-shapely
+ python-wheel))
(home-page "https://github.com/rasterio/rasterio";)
(synopsis "Fast and direct raster I/O for use with Numpy and SciPy")
(description "This package implements fast and direct raster I/O for use
@@ -1833,7 +1844,7 @@ with Numpy and SciPy.")
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
(native-inputs
(list python-cython python-matplotlib python-pytest
- python-pytest-cov))
+ python-pytest-cov python-setuptools python-wheel))
(inputs
(list geos))
(propagated-inputs
@@ -2119,7 +2130,9 @@ NetCDF files can also be read and modified. Python-HDF4
is a fork of
(native-inputs
(list python-netcdf4
python-pytest
- python-setuptools-scm))
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(propagated-inputs
(list python-h5py python-packaging))
(home-page "https://h5netcdf.org";)
@@ -2414,7 +2427,7 @@ and lookups.")
(base32 "0lvshl2fhwa568d3y3vmx45hdp8gk5w9yl3b2q5d66r5vqn1sfwl"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-setuptools-scm python-pytest))
+ (list python-setuptools-scm python-pytest python-setuptools python-wheel))
(propagated-inputs
(list python-boolean.py))
(home-page "https://github.com/nexB/license-expression";)
@@ -2537,7 +2550,8 @@ inter-process communication.")
(base32
"058av1r760ws7z6qffsjpqa39fmdxw0s1wnyr7p50y3zclg6cyqk"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest python-setuptools-scm))
+ (native-inputs (list python-pytest python-setuptools-scm
+ python-setuptools python-wheel))
(home-page "https://github.com/tox-dev/py-filelock";)
(synopsis "Platform independent file lock")
(description "@code{filelock} contains a single module implementing
@@ -2798,7 +2812,8 @@ class.")
;; These tests fail with "OSError: [Errno 19] No such device".
"-k" "not BasicTestUdpMulticastBusIPv")))
(propagated-inputs
- (list python-msgpack python-typing-extensions python-wrapt))
+ (list python-msgpack python-typing-extensions python-wrapt
+ python-setuptools))
(native-inputs
(list ;; python-canalystii ; Not packed yet
python-codecov
@@ -2811,7 +2826,8 @@ class.")
python-pytest
python-pytest-cov
python-pytest-runner
- python-pytest-timeout))
+ python-pytest-timeout
+ python-wheel))
(home-page "https://github.com/hardbyte/python-can";)
(synopsis "Controller Area Network (CAN) interface module for Python")
(description "This package defines the @code{can} module, which provides
@@ -2912,6 +2928,7 @@ a library.")
(base32 "1920wbh2b7a8qn7zx2iiqbcdaax335l81a73x9pp8h11yzs2jdmh"))))
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;There are none
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/gvalkov/optparse-pretty";)
(synopsis "Compact help formatter for optparse")
(description
@@ -3156,6 +3173,7 @@ for additional processing.")
;; XXX: Fails with: "In procedure utime: No such file
;; or directory".
(delete 'ensure-no-mtimes-pre-1980))))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/fastai/fastprogress";)
(synopsis "Progress bar for Jupyter Notebook and console")
(description
@@ -3389,6 +3407,8 @@ of @code{xmlfile}.")
python-pytest
python-pytest-rerunfailures
python-pytest-xdist
+ python-setuptools
+ python-wheel
unzip
(origin
(method url-fetch)
@@ -3679,7 +3699,9 @@ Python.")
python-pytest-subtests
python-responses
python-tox
- python-types-requests))
+ python-types-requests
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/omni-us/jsonargparse/";)
(synopsis "Implement minimal boilerplate CLIs derived from type hints")
(description
@@ -3884,7 +3906,7 @@ commands.")
(base32
"1a4h0jpsr3wjciqg9a5kslxv65d3qqgmqgkpai4cl77wlpcxfk89"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://jiffyclub.github.io/palettable/";)
(synopsis "Color palettes for Python")
(description "Palettable (formerly brewer2mpl) is a library of color
@@ -3965,7 +3987,8 @@ syntax.")
(string-append "not test_sending_empty_netstring"
" and not test_sending_one_netstring"
" and not test_sending_two_netstrings"))))
- (native-inputs (list python-pytest python-twisted))
+ (native-inputs (list python-pytest python-twisted python-setuptools
+ python-wheel))
(home-page "https://launchpad.net/parsley";)
(synopsis "Parsing and pattern matching Python library")
(description
@@ -4069,7 +4092,9 @@ Cython for speed.")
python-pytest-cov
python-pytest-mypy
python-pytest-timeout
- python-redis))
+ python-redis
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/WoLpH/portalocker";)
(synopsis "Python library for file locking")
(description "Portalocker is a library to provide an easy API to file
@@ -4159,7 +4184,9 @@ and is not compatible with JSON.")
python-pytest
python-pytest-astropy
python-pytest-cov
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://extension-helpers.readthedocs.io";)
(synopsis "Astropy ecosystem utilities for building and installing packages")
(description
@@ -4633,12 +4660,14 @@ clickgen is using @code{anicursorgen} and
@code{xcursorgen} under the hood.")
python-orjson
python-pandas
python-pytz
+ python-setuptools ; For pkg_resources.
python-sqlalchemy
python-urllib3
python-zstandard))
(native-inputs
(list python-cython
- python-pytest))
+ python-pytest
+ python-wheel))
(home-page "https://github.com/ClickHouse/clickhouse-connect";)
(synopsis
"ClickHouse database core driver for Python, Pandas, and Superset")
@@ -4683,7 +4712,7 @@ well-tested and interoperable CLIs for handling GeoJSON.")
"05c6cjpnf9s72gyn5dckxbmd8rf2kgdzfsl7pqzrnc1lcdl13zmv"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-click))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/janLuke/cloup";)
(synopsis "Extension library for python-click")
(description
@@ -4787,7 +4816,8 @@ compare, diff, and patch JSON and JSON-like structures in
Python.")
(when tests?
(setenv "JSON_SCHEMA_TEST_SUITE" "json")
(invoke "trial" "jsonschema")))))))
- (native-inputs (list python-setuptools-scm python-twisted))
+ (native-inputs (list python-setuptools-scm python-twisted
+ python-setuptools python-wheel))
(propagated-inputs
(list python-attrs
python-importlib-metadata
@@ -4990,7 +5020,9 @@ memory usage and transliteration quality.")
python-cryptography
python-pytest
python-sphinx
- python-sphinx-rtd-theme))
+ python-sphinx-rtd-theme
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/progrium/pyjwt";)
(synopsis "JSON Web Token implementation in Python")
(description
@@ -5237,7 +5269,7 @@ work on your part.")
(base32
"17f55gi55rg47nm88fn3f8851ph03dgykdp011lxr3j6hk18lyfv"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/tsutsu3/uc.micro-py";)
(synopsis "Unicode data files for linkify-it-py projects")
(description "This package contains a micro subset of Unicode data files
@@ -5259,7 +5291,7 @@ for linkify-it-py projects.")
"0fg0a1lc8xbb62y9krxcp708ll58dxcwm8i7rrwpkd5sh2229f6x"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-uc-micro-py))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/tsutsu3/linkify-it-py";)
(synopsis "Links recognition library with full Unicode support")
(description "This is Python port of
@@ -5284,7 +5316,7 @@ recognition library with full Unicode support. It has
features like:
"19a8dga8rnmjn5gy1cy1wdi28swbkdkypwbqikbxil6ynqcg3c20"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest python-setuptools-scm))
+ (list python-pytest python-setuptools python-setuptools-scm python-wheel))
(home-page "https://github.com/smarie/python-makefun";)
(synopsis "Library to dynamically create python functions")
(description "@code{makefun} helps create functions dynamically with a
@@ -5867,7 +5899,9 @@ via commands such as @command{rst2man}, as well as
supporting Python code.")
python-flake8
python-mock
python-pyparsing
- python-pytest))
+ python-pytest
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-lxml))
(home-page "https://github.com/python-openxml/python-docx/";)
@@ -6025,6 +6059,7 @@ text styles of documentation.")
(base32
"1qm4xdmzd4q5pc9h5gjdpr5m7lg06k8dvqnjn7d07d3fhani8d90"))))
(build-system pyproject-build-system)
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/mina86/pygtrie";)
(synopsis "Pure Python trie data structure implementation")
(description
@@ -7447,7 +7482,7 @@ readable format.")
(base32 "1v34xdvh6i5cn5srwicvp0i2kvv8fzsv0v9p72ng081nsczmhgvr"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-cffi libgit2))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/libgit2/pygit2";)
(synopsis "Python bindings for libgit2")
(description "Pygit2 is a set of Python bindings to the libgit2 shared
library.")
@@ -7685,7 +7720,9 @@ semantic version parser for Node.js.")
(base32
"1r1lcq59v6l75wkbp7mypanr69a6fv6m58v6dw3v6b4vwz5nqg0z"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-appdirs python-nose python-pyyaml))
+ (propagated-inputs (list python-appdirs python-nose python-pyyaml
+ python-setuptools))
+ (native-inputs (list python-wheel))
(home-page "https://github.com/simonvh/norns";)
(synopsis "Simple YAML-based config module")
(description "This package provides a simple YAML-based config module.")
@@ -9006,9 +9043,10 @@ from FFMPEG, reliably terminating the process when
done.")
(delete-file "tests/test_freeimage.py"))))))
(inputs (list freeimage))
(propagated-inputs
- (list python-imageio-ffmpeg python-numpy python-pillow python-psutil))
+ (list python-imageio-ffmpeg python-numpy python-pillow python-psutil
+ python-setuptools))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-wheel))
(home-page "https://imageio.github.io/";)
(synopsis "Library for reading and writing a wide range of image data")
(description
@@ -10083,7 +10121,9 @@ releases.")
python-pytest-cov
python-pytest-enabler
python-pytest-flake8
- python-pytest-mypy))
+ python-pytest-mypy
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/jaraco/jaraco.test";)
(synopsis "Testing support by jaraco")
(description "This package provides testing support by jaraco.")
@@ -10441,6 +10481,7 @@ without using the configuration machinery.")
python-pyzmq
python-tornado-6
python-traitlets))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://jupyter.org/";)
(synopsis "Jupyter protocol implementation and client libraries")
(description
@@ -10478,7 +10519,9 @@ installing @code{kernelspec}s for use with Jupyter
frontends.")
python-pytest-timeout
python-async-generator
python-ipython
- python-ipykernel-bootstrap))
+ python-ipykernel-bootstrap
+ python-setuptools
+ python-wheel))
(properties (alist-delete 'hidden? (package-properties base))))))
(define-public python-ipykernel
@@ -10559,6 +10602,8 @@ installing @code{kernelspec}s for use with Jupyter
frontends.")
;; avoids that.
python-pytest-bootstrap
python-pytest-timeout
+ python-setuptools
+ python-wheel
tini))
(home-page "https://ipython.org";)
(synopsis "IPython Kernel for Jupyter")
@@ -10578,7 +10623,7 @@ installing @code{kernelspec}s for use with Jupyter
frontends.")
;; left out here to break the cycle.
#:phases #~(modify-phases %standard-phases
(delete 'sanity-check))))
- (native-inputs '())
+ (native-inputs (list python-setuptools python-wheel))
(propagated-inputs
(modify-inputs (package-propagated-inputs parent)
(replace "python-jupyter-client" python-jupyter-client-bootstrap)
@@ -10648,7 +10693,9 @@ callback signature using a prototype function.")
python-unidecode))
(native-inputs
(list python-pytest
- python-pytest-cov))
+ python-pytest-cov
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/titipata/pubmed_parser";)
(synopsis "Parser for Pubmed Open-Access Subset and MEDLINE XML
repository")
(description
@@ -11875,6 +11922,7 @@ falling into the Python interpreter.")
"{ name = \"Maarten van der Sande\", email =
\"maartenvandersande@hotmail.com\"}")
(("license = \"MIT\"") "license = { file = \"LICENSE\"}")))))))
(propagated-inputs (list python-numba python-numpy python-pandas))
+ (native-inputs (list python-setuptools python-wheel python-toml))
(home-page "https://github.com/Maarten-vd-Sande/qnorm";)
(synopsis "Quantile normalization")
(description "This tool implements quantile normalization. It properly
@@ -11935,7 +11983,9 @@ low-level X clients. It is written entirely in
Python.")
(build-system pyproject-build-system)
(native-inputs
(list python-pytest
- python-six)) ; required for conversion, not at run-time
+ python-setuptools
+ python-six ; required for conversion, not at run-time
+ python-wheel))
(home-page
"https://docs.python.org/3/library/functools.html#functools.singledispatch";)
(synopsis "Backport of singledispatch feature from Python 3.4")
@@ -12363,7 +12413,8 @@ plugin for flake8 to check PEP-8 naming conventions.")
"00zahgw9zjfqwf0218bj5k732aibnn68cq1p8f0wmbirb7fy5k31"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-packaging))
- (native-inputs (list python-pypa-build python-pytest python-tomli))
+ (native-inputs (list python-pypa-build python-pytest python-setuptools
+ python-tomli python-wheel))
(home-page "https://github.com/FFY00/python-pyproject-metadata";)
(synopsis "Dataclass for PEP 621 metadata")
(description "This project does not implement the parsing of
@@ -13134,7 +13185,8 @@ the @code{sendfile(2)} system call.")
;; Using Pytest instead of the Makefile causes the command line tests to
;; fail on unknown Pytest arguments.
(arguments (list #:test-flags #~(list "-k" "not TestCommandLineParser")))
- (native-inputs (list python-psutil python-pytest))
+ (native-inputs (list python-psutil python-pytest python-setuptools
+ python-wheel))
(propagated-inputs (list python-pyopenssl python-pysendfile))
(home-page "https://github.com/giampaolo/pyftpdlib/";)
(synopsis "Asynchronous and scalable Python FTP server library")
@@ -13881,7 +13933,8 @@ asyncio.")
"0yv1wayrw9g6k0c2f721kha7wsv0s1fdlxpf5x7f34iqzq9z272h"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-numpy python-pyparsing))
- (native-inputs (list python-hypothesis python-pytest))
+ (native-inputs (list python-hypothesis python-pytest python-setuptools
+ python-wheel))
(home-page "https://github.com/mapbox/snuggs";)
(synopsis "Snuggs are S-expressions for Numpy")
(description "Snuggs are S-expressions for Numpy.")
@@ -14326,7 +14379,7 @@ domains support.")
(build-system pyproject-build-system)
(arguments
(list #:tests? #f))
- (native-inputs (list python-setuptools-scm))
+ (native-inputs (list python-setuptools python-setuptools-scm
python-wheel))
(home-page "https://github.com/jaraco/path";)
(synopsis "Object-oriented file system path manipulation library")
(description "@code{path} (formerly @code{path.py}) implements path
@@ -14932,7 +14985,9 @@ significantly better performance.")
python-pylint
python-pytest
python-pytest-benchmark
- python-pytest-cache))
+ python-pytest-cache
+ python-setuptools
+ python-wheel))
(home-page
"https://github.com/horejsek/python-fastjsonschema";)
(synopsis
@@ -15015,7 +15070,7 @@ systems, as a command line tool, and as a Python
library.")
(delete-file-recursively "bleach/_vendor/html5lib")))))
(build-system pyproject-build-system)
(propagated-inputs (list python-html5lib python-tinycss2
python-webencodings))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/mozilla/bleach";)
(synopsis "Whitelist-based HTML-sanitizing tool")
(description "Bleach is an easy whitelist-based HTML-sanitizing tool.")
@@ -15551,7 +15606,7 @@ simulation, statistical modeling, machine learning and
much more.")
(base32
"1r9ixxnish9j3dq4h0z0cwlkr4f5lgi6d8mhbzw59hbbjlmp2qhd"))))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(build-system pyproject-build-system)
(arguments
(list #:test-flags
@@ -15752,7 +15807,7 @@ This allows one to make simple text-mode user
interfaces on Unix-like systems")
(build-system pyproject-build-system)
(propagated-inputs (list python-pydantic python-srsly
python-typing-extensions))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/explosion/confection";)
(synopsis "Config system for Python")
(description "Confection is a lightweight library that offers a
@@ -15816,7 +15871,8 @@ config files.")
(propagated-inputs (list java-antlr4-runtime-python
python-pydevd
python-pyyaml))
- (native-inputs (list icedtea antlr4 python-pytest python-pytest-mock))
+ (native-inputs (list icedtea antlr4 python-pytest python-pytest-mock
+ python-setuptools python-wheel))
(home-page "https://github.com/omry/omegaconf";)
(synopsis "Flexible configuration system")
(description "OmegaConf is a hierarchical configuration system and
@@ -15836,7 +15892,7 @@ consistent API regardless of how the configuration was
created.")
"17vky4ihicbf7nggg30xs7h3g5rxzwgch8vilnnrvdaacszkq2qv"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-mock python-pytest))
+ (list python-mock python-pytest python-setuptools python-wheel))
(synopsis "Replacement for argparse")
(description "A drop-in replacement for argparse that allows options to
also
be set via config files and/or environment variables.")
@@ -16951,6 +17007,7 @@ in pure Python.")
(base32
"14hwk9j5zjc8rvirw95mrb07zdnpjaxjx2mj3rnq8pnlyaa809r4"))))
(build-system pyproject-build-system)
+ (arguments (list #:tests? #f)) ; No tests in PyPi tarball.
(native-inputs
(list python-poetry-core))
(home-page "https://github.com/srstevenson/xdg-base-dirs";)
@@ -17433,7 +17490,8 @@ synchronously (wait until ready).")
python-scikit-learn
python-scipy
python-toolz))
- (native-inputs (list python-cython python-pytest python-setuptools-scm))
+ (native-inputs (list python-cython python-pytest python-setuptools-scm
+ python-setuptools python-wheel))
(home-page "https://pypi.org/project/cesium/";)
(synopsis "Library for time-series feature extraction and processing")
(description
@@ -17510,7 +17568,8 @@ ISO 8859, etc.).")
(lambda _
(setenv "QT_QPA_PLATFORM" "offscreen"))))))
(native-inputs
- (list python-pytest python-pytest-cov python-pytest-xdist))
+ (list python-pytest python-pytest-cov python-pytest-xdist
+ python-setuptools python-wheel))
(inputs
(list qtbase-5))
(propagated-inputs
@@ -17699,7 +17758,9 @@ checking library.")
python-pytest
python-pytest-cov
python-pytest-dependency
- python-tomli))
+ python-tomli
+ python-setuptools
+ python-wheel))
(arguments
`(#:phases
(modify-phases %standard-phases
@@ -18823,7 +18884,9 @@ def get_requires_for_build_sdist(config_settings=None):
python-pytest-flake8
python-pytest-mypy
;; For the version number
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/jaraco/inflect";)
(synopsis "Correctly generate plurals, singular nouns, ordinals,
indefinite articles")
(description
@@ -20873,7 +20936,8 @@ from the header, as well as section details and data
available.")
(propagated-inputs
(list pigz python-isal python-typing-extensions))
(native-inputs
- (list python-pytest python-pytest-timeout python-setuptools-scm))
+ (list python-pytest python-pytest-timeout python-setuptools-scm
+ python-setuptools python-wheel))
(home-page "https://github.com/marcelm/xopen/";)
(synopsis "Open compressed files transparently")
(description "This module provides an @code{xopen} function that works
@@ -20957,6 +21021,7 @@ efficient as possible on all supported Python
versions.")
"1gqfh00ics2k1sm5g46l3bi8cl5fc5d1cwzh1ylvcxvdvypklqc7"))))
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;there are none
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/noahmorrison/chevron";)
(synopsis "Mustache templating language renderer")
(description "This package provides a Python implementation of the
@@ -21009,7 +21074,9 @@ Mustache templating language renderer.")
python-pyarrow
python-pytest
python-pytest-runner
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://www.duckdb.org";)
(synopsis "DuckDB embedded database")
(description "DuckDB is an in-process SQL OLAP database management
@@ -21868,6 +21935,7 @@ point is the point of maximum curvature.")
python-jinja2
python-pluggy
python-pygments
+ python-setuptools ; For pkg_resources.
python-tomli))
(native-inputs
(list python-flake8
@@ -22082,7 +22150,8 @@ while only declaring the test-specific fields.")
;; Disable tests that require internet.
(list #:test-flags '(list "-k" "not net")))
(native-inputs
- (list python-pytest python-testfixtures python-click python-requests))
+ (list python-pytest python-testfixtures python-click python-requests
+ python-setuptools python-wheel))
(home-page "https://github.com/pndurette/gTTS";)
(synopsis "Google Translate text-to-speech interface")
(description
@@ -22574,7 +22643,9 @@ manipulation, or @code{stdout}.")
python-mypy
python-pytest
python-pytz
- python-simplejson))
+ python-simplejson
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/marshmallow-code/marshmallow";)
(synopsis "Convert complex datatypes to and from native Python datatypes")
(description "@code{marshmallow} provides a library for converting complex
@@ -22636,7 +22707,9 @@ datatypes to and from native Python datatypes.")
python-marshmallow
python-mypy
python-pytest
- python-pyyaml))
+ python-pyyaml
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/marshmallow-code/apispec";)
(synopsis "Swagger/OpenAPI specification generator")
(description "@code{python-apispec} is a pluggable API specification
@@ -22655,7 +22728,7 @@ Swagger.")
(base32
"1wyw30402xq2a8icrsjmy9v43jyvawcjd85ccb2zicqlg4k5pcqd"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-apispec))
+ (propagated-inputs (list python-apispec python-setuptools))
(native-inputs
(list python-bottle
python-flake8
@@ -22665,7 +22738,8 @@ Swagger.")
python-pytest
python-pyyaml
python-tornado
- python-tox))
+ python-tox
+ python-wheel))
(home-page "https://github.com/marshmallow-code/apispec-webframeworks";)
(synopsis "Web framework plugins for apispec")
(description "This package provides plugins for using @code{apispec} with
@@ -23354,7 +23428,9 @@ particularly convenient for use in tests.")
python-pytest-mypy
python-setuptools-scm
python-types-freezegun
- python-types-pytz))
+ python-types-pytz
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-jaraco-functools python-pytz))
(home-page "https://github.com/jaraco/tempora";)
(synopsis "Python date and time objects and routines")
@@ -23530,7 +23606,9 @@ queue.")
(list python-pytest
python-pytest-asyncio
python-pytest-repeat
- python-pytest-timeout))
+ python-pytest-timeout
+ python-setuptools
+ python-wheel))
(home-page "https://zict.readthedocs.io/en/latest/";)
(synopsis "Composable mutable mapping tools")
(description "This package provides abstract @code{MutableMapping} classes
@@ -23716,7 +23794,7 @@ files, and Makefiles.")
(base32 "1q7ajgqjfivxqsqgnhp4lc4p6jxyh4zprcsdbpd6dw54inaf0av5"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/Suor/whatever";)
(synopsis "Make anonymous functions by partial application of operators")
(description "@code{whatever} provides an easy way to make anonymous
@@ -23738,7 +23816,7 @@ functions by partial application of operators.")
(file-name (git-file-name name version))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest python-whatever))
+ (list python-pytest python-whatever python-setuptools python-wheel))
(home-page "https://github.com/Suor/funcy";)
(synopsis "Functional tools")
(description "@code{funcy} is a library that provides functional tools.
@@ -24126,7 +24204,7 @@ working with iterables.")
"040i6bjqvl33j30v865shsk30s3h7f16pqwiaj5kig857dfmqm4r"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-bitarray python-xxhash))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/joseph-fox/python-bloomfilter";)
(synopsis "Bloom filter")
(description "This package provides a scalable Bloom filter implemented in
@@ -25063,7 +25141,8 @@ tool).")
python-msgpack
python-typing-extensions))
(native-inputs
- (list python-cython python-pytest python-setuptools-scm))
+ (list python-cython python-pytest python-setuptools-scm
+ python-setuptools python-wheel))
(home-page "https://github.com/zarr-developers/numcodecs";)
(synopsis "Buffer compression and transformation codecs")
(description
@@ -25169,6 +25248,7 @@ N-dimensional arrays for Python.")
python-pandas
python-scipy
python-scikit-learn
+ python-setuptools ; For pkg_resources.
python-zarr))
(native-inputs
(list python-boltons
@@ -25206,7 +25286,7 @@ object-oriented library such as @code{scikit-learn}.")
(with-directory-excursion "/tmp"
(invoke "nosetests" "-v"))))))))
(native-inputs
- (list python-nose))
+ (list python-nose python-setuptools python-wheel))
(home-page "https://pypi.org/project/dill/";)
(synopsis "Serialize all of Python")
(description "Dill extends Python's @code{pickle} module for serializing
@@ -25258,6 +25338,7 @@ preload_resources\
(invoke "python" "-m" "multiprocess.tests")))))))
(propagated-inputs
(list python-dill))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://pypi.org/project/multiprocess/";)
(synopsis "Multiprocessing and multithreading in Python")
(description
@@ -25619,7 +25700,8 @@ append on old values. Partd excels at shuffling
operations.")
(propagated-inputs
(list python-aiohttp python-libarchive-c python-requests python-tqdm))
(native-inputs
- (list python-pytest python-pytest-mock python-numpy))
+ (list python-pytest python-pytest-mock python-numpy python-setuptools
+ python-wheel))
(home-page "https://github.com/intake/filesystem_spec";)
(synopsis "File-system specification")
(description "The purpose of this package is to produce a template or
@@ -25845,6 +25927,7 @@ RFC 8265 and RFC 8266.")
(base32
"0ga3b0m8lfsv1m3260p83lhis52yvz3d42q8gip4gfj823849hnj"))))
(build-system pyproject-build-system)
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/abseil/abseil-py";)
(synopsis "Abseil Python common libraries")
(description
@@ -26149,7 +26232,8 @@ programs that do multiple things at the same time with
parallelized I/O.")
(sha256
(base32 "15wa66cs165wawh4pi808ac43n67b8jqddi5ppdcbkj5gfi68hpi"))))
(build-system pyproject-build-system)
- (native-inputs (list python-attrs python-pytest))
+ (native-inputs (list python-attrs python-pytest python-setuptools
+ python-wheel))
(propagated-inputs
(list python-mypy python-mypy-extensions python-trio
python-typing-extensions))
@@ -27291,7 +27375,7 @@ scripts to load entry points more quickly.")
(when tests?
(invoke "python" "-m" "unittest" "discover" "-v")))))))
;; ModuleNotFoundError: No module named 'poetry'
- (native-inputs (list python-poetry-core))
+ (native-inputs (list python-poetry-core python-six))
(home-page "https://github.com/vlasovskikh/funcparserlib";)
(synopsis
"Recursive descent parsing library based on functional combinators")
@@ -27575,7 +27659,9 @@ but portable.")
python-pytest-cov
python-pytest-mock
python-pytest-sugar
- python-pytest-toolbox))
+ python-pytest-toolbox
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/samuelcolvin/watchgod";)
(synopsis "Simple, modern file watching and code reload in Python")
(description
@@ -28838,7 +28924,7 @@ placement and scaling of SVG figures and adding
markers, such as labels.")
;; Avoid python-pytest-coverage
#:test-flags '(list "-c /dev/null")))
(propagated-inputs (list python-six python-wcwidth))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/jquast/blessed";)
(synopsis "Wrapper around terminal capabilities")
(description
@@ -29105,7 +29191,8 @@ It adds a simple and readable way to print stuff during
development.")
(list python-dateutil python-pytz python-regex python-ruamel.yaml
python-tzlocal))
(native-inputs
- (list python-flake8 python-pytest python-parameterized tzdata-for-tests))
+ (list python-flake8 python-pytest python-parameterized tzdata-for-tests
+ python-setuptools python-wheel))
(arguments
`(#:phases
(modify-phases %standard-phases
@@ -29802,7 +29889,9 @@ older versions of Python and so are packaged here.")
python-sphinx
python-sphinx-autobuild
python-sphinx-rtd-theme
- python-tox))
+ python-tox
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/Delgan/loguru";)
(synopsis "Python logging made (stupidly) simple")
(description "Python logging made (stupidly) simple")
@@ -31896,6 +31985,7 @@ Python, with static types.")
"0cas3cjkhrvsz2rmqnhqiihy9j79wxi9xbih8jk0p9r48c2q3iyy"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-types-urllib3))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/python/typeshed";)
(synopsis "Typing stubs for requests")
(description "This package provides typing stubs for requests.")
@@ -31928,6 +32018,7 @@ Python, with static types.")
(base32
"0zcipjdnbnc8ymk8mh9n5mypa0qr03rqj98lbmahldcdrrap6md1"))))
(build-system pyproject-build-system)
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/python/typeshed";)
(synopsis "Typing stubs for urllib3")
(description "This package provides typing stubs for urllib3.")
@@ -31945,6 +32036,7 @@ Python, with static types.")
"1vdwp1jjg27b22qxgm49v21nb8vm1iki3bfsm0fnq2rsz5alfwz2"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-importlib-resources))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/JelleZijlstra/typeshed_client";)
(synopsis "Library for accessing stubs in typeshed")
(description
@@ -32349,7 +32441,9 @@ than trying to just split strings.")
python-pytest-timeout
python-mock
python-numpy
- python-psutil))
+ python-psutil
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/explosion/srsly";)
(synopsis "Serialization utilities for Python")
(description "This package bundles some of the best Python serialization
@@ -32578,7 +32672,7 @@ parsing rules in a single place.")
(base32
"1irw4sqrsgpc0ibxdv1hlx0d0jr1fqs48bj6mpfylzqkag9ywlfj"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/cgdeboer/iteround";)
(synopsis "Sum-safe rounding for Iterables")
(description "Iteround is a standard library sum-safe rounding library for
@@ -32692,7 +32786,10 @@ object, which can be useful if you want to force your
objects into a table.")
python-mock
python-numpy
python-pytest
- python-pyyaml))
+ python-pyyaml
+ python-setuptools
+ python-wheel
+ python-toml))
(home-page "https://github.com/seperman/deepdiff";)
(synopsis "Deep difference and search of any Python object/data")
(description
@@ -32721,7 +32818,9 @@ other.")
(setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version))))))
(native-inputs
(list python-setuptools-scm
- python-pytest))
+ python-pytest
+ python-setuptools
+ python-wheel))
(home-page "https://deepmerge.readthedocs.io/en/latest/";)
(synopsis "Merge nested data structures")
(description
@@ -33146,7 +33245,7 @@ versa. Extended WKB/WKT are also supported.")
(base32
"1c0xx3p3lzrlyqhmccyq9c50f8v9pqk2992gb4nl50h2yy1m3s8v"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://nedbatchelder.com/code/cog";)
(synopsis "Content generation tool that leverages Python")
(description "Cog is a file generation tool. It allows using pieces of
@@ -33556,7 +33655,10 @@ path.")
python-ruamel.yaml
python-slugify
python-tornado
- tzdata-for-tests))
+ tzdata-for-tests
+ python-setuptools
+ python-wheel
+ python-toml))
(home-page "https://github.com/spanezz/staticsite";)
(synopsis "Static site generator")
(description "Statistic is a static site generator based on Markdown and
@@ -33632,8 +33734,9 @@ markdown-compliant strings.")
(base32
"1v5c9bim8af6g8kgxp2dhm96n5vkr8sqi56w0bdh1xy49v03lw3g"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-pillow))
+ (propagated-inputs (list python-pillow python-setuptools))
(inputs (list zbar))
+ (native-inputs (list python-wheel))
(home-page "https://github.com/Polyconseil/zbarlight";)
(synopsis "Simple Python wrapper for the zbar barcode library")
(description "Zbarlight is a simple wrapper for the zbar library. It can
@@ -33652,6 +33755,7 @@ read all zbar supported codes.")
"0bqkrjxp2fbz34x3wxkxji39kxinypzg8q2994sibiay29mpipxb"))))
(build-system pyproject-build-system)
(inputs (list openssl))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://zeroc.com";)
(synopsis "RPC framework")
(description
diff --git a/gnu/packages/qt.scm b/gnu/packages/qt.scm
index e8654eee44..08bc47fded 100644
--- a/gnu/packages/qt.scm
+++ b/gnu/packages/qt.scm
@@ -3220,7 +3220,8 @@ instances.")
(native-inputs
(list python-wrapper))
(propagated-inputs
- (list python-toml python-packaging python-ply))
+ (list python-toml python-packaging python-ply python-setuptools
+ python-wheel))
(home-page "https://www.riverbankcomputing.com/software/sip/intro";)
(synopsis "Python binding creator for C and C++ libraries")
(description
diff --git a/gnu/packages/rpc.scm b/gnu/packages/rpc.scm
index a88c79f8b9..83c951c337 100644
--- a/gnu/packages/rpc.scm
+++ b/gnu/packages/rpc.scm
@@ -253,7 +253,7 @@ type information of gRPC.")
(inputs
(list abseil-cpp-20211102.0 c-ares grpc-for-python-grpcio openssl re2
zlib))
(native-inputs
- (list python-cython))
+ (list python-cython python-setuptools python-wheel))
(propagated-inputs
(list python-six))
(home-page "https://grpc.io";)
diff --git a/gnu/packages/serialization.scm b/gnu/packages/serialization.scm
index 9c114aaf39..6d6c4386c9 100644
--- a/gnu/packages/serialization.scm
+++ b/gnu/packages/serialization.scm
@@ -656,7 +656,9 @@ RPC system. Think JSON, except binary. Or think Protocol
Buffers, except faste
python-mypy
python-pytest
python-setuptools-scm
- python-versioneer))
+ python-versioneer
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-pyyaml python-tomli python-tomli-w))
(home-page "https://jcristharif.com/msgspec/";)
(synopsis "Fast serialization/validation library")
diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm
index 173accd768..5d70da8fec 100644
--- a/gnu/packages/sphinx.scm
+++ b/gnu/packages/sphinx.scm
@@ -371,7 +371,9 @@ Blog, News or Announcements section to a Sphinx website.")
(propagated-inputs (list python-docutils-0.15 python-sphinx-4))
(native-inputs
(list python-pytest
- python-pytest-regressions))
+ python-pytest-regressions
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/executablebooks/sphinx-panels";)
(synopsis "Sphinx extension for creating panels in a grid layout")
(description
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index dc620b13a1..9b314c3773 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2049,7 +2049,7 @@ and fast file reading.")
;; Remove dataset with unclear license.
(lambda _
(delete-file "vega_datasets/_data/la-riots.csv"))))))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(propagated-inputs (list python-pandas))
(home-page "https://github.com/altair-viz/vega_datasets";)
(synopsis "Example datasets used by Vega-related projects")
@@ -2082,6 +2082,7 @@ and Vega-Lite examples.")
python-jsonschema
python-numpy
python-pandas
+ python-setuptools
python-toolz
python-typing-extensions))
(native-inputs (list python-black
@@ -2115,7 +2116,8 @@ and Vega-Lite examples.")
(lambda _
;; Cython extensions have to be built before running the tests.
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
- (propagated-inputs (list python-cython python-numpy))
+ (propagated-inputs (list python-cython python-numpy python-setuptools
+ python-wheel))
(native-inputs (list python-nose))
(home-page "http://github.com/daleroberts/hdmedians";)
(synopsis "High-dimensional medians")
@@ -2165,7 +2167,9 @@ machine learning, computer vision, and high-dimensional
statistics.")
python-scipy
python-typing-extensions
python-xarray
- python-xarray-einstats))
+ python-xarray-einstats
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/arviz-devs/arviz";)
(synopsis "Exploratory analysis of Bayesian models")
(description
@@ -2307,7 +2311,9 @@ building design matrices.")
python-pytest
python-pytest-randomly
python-pytest-xdist
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://statsmodels.sourceforge.net/";)
(synopsis "Statistical modeling and econometrics in Python")
(description
diff --git a/gnu/packages/terminals.scm b/gnu/packages/terminals.scm
index 081ef19af1..a336b33d34 100644
--- a/gnu/packages/terminals.scm
+++ b/gnu/packages/terminals.scm
@@ -99,6 +99,7 @@
#:use-module (gnu packages popt)
#:use-module (gnu packages protobuf)
#:use-module (gnu packages python)
+ #:use-module (gnu packages python-build)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages qt)
@@ -244,8 +245,8 @@ managers.")
(substitute* "tests/pty_test.py"
(("python3") (search-input-file inputs
"/bin/python3"))))))))
(native-inputs
- ;; For tests.
- (list python-pytest))
+ (list python-pytest ; For tests.
+ python-setuptools python-wheel))
(home-page "https://asciinema.org";)
(synopsis "Terminal session recorder")
(description
diff --git a/gnu/packages/time.scm b/gnu/packages/time.scm
index 5c8f65a1e6..33b0457af2 100644
--- a/gnu/packages/time.scm
+++ b/gnu/packages/time.scm
@@ -245,6 +245,7 @@ datetime module, available in Python 2.3+.")
"1wg3f3imjq3snvjccv64h5498pqv9xz664xhni7bsh8mnay91p83"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-dateutil python-pytz))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/jmcantrell/python-dateutils";)
(synopsis "Various utilities for working with date and datetime objects")
(description
@@ -328,7 +329,7 @@ Python datetime objects.")
;; It's optional, remove this constrain where python-pytz is updated.
#:test-flags #~(list "-k" "not test_with_pytz")))
(native-inputs
- (list python-poetry-core python-pytest))
+ (list python-poetry-core python-pytest python-setuptools))
(propagated-inputs
(list python-cffi python-h3-3 python-numba python-numpy python-pytz))
(home-page "https://timezonefinder.michelfe.it/gui";)
diff --git a/gnu/packages/tor.scm b/gnu/packages/tor.scm
index 8ae2118188..ec4fb58f38 100644
--- a/gnu/packages/tor.scm
+++ b/gnu/packages/tor.scm
@@ -50,6 +50,7 @@
#:use-module (gnu packages glib)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
+ #:use-module (gnu packages python-build)
#:use-module (gnu packages python-check)
#:use-module (gnu packages python-crypto)
#:use-module (gnu packages python-web)
@@ -446,7 +447,8 @@ Potential client and exit connections are scrubbed of
sensitive information.")
"1542g6alycwlmvndxcijzn4d5lgycmxxb78gqd8qwgm9kw0fnr3q"))))
(build-system pyproject-build-system)
(native-inputs
- (list (list glib "bin"))) ; for glib-compile-schemas.
+ (list python-setuptools python-wheel
+ (list glib "bin"))) ; for glib-compile-schemas.
(inputs
(list python-fire
python-psutil
diff --git a/gnu/packages/tree-sitter.scm b/gnu/packages/tree-sitter.scm
index 117c2acb0c..f4e897fbc5 100644
--- a/gnu/packages/tree-sitter.scm
+++ b/gnu/packages/tree-sitter.scm
@@ -29,6 +29,7 @@
#:use-module (gnu packages graphviz)
#:use-module (gnu packages icu4c)
#:use-module (gnu packages node)
+ #:use-module (gnu packages python-build)
#:use-module (guix build-system cargo)
#:use-module (guix build-system gnu)
#:use-module (guix build-system pyproject)
@@ -86,7 +87,8 @@
name)))))))))
(inputs (list tree-sitter))
(native-inputs
- (list tree-sitter-python tree-sitter-javascript))
+ (list tree-sitter-python tree-sitter-javascript
+ python-setuptools python-wheel))
(home-page "https://github.com/tree-sitter/py-tree-sitter";)
(synopsis "Python bindings to the Tree-sitter parsing library")
(description "This package provides Python bindings to the
diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm
index 801c2602e4..ea3dd7c793 100644
--- a/gnu/packages/video.scm
+++ b/gnu/packages/video.scm
@@ -5051,7 +5051,7 @@ video from a Wayland session.")
"1z9j3r9pm4rdynlmhgsgnwnnaqw5274yfy4kyillgd77msnpbhaw"))))
(build-system pyproject-build-system)
(native-inputs
- (list gettext-minimal pkg-config))
+ (list gettext-minimal pkg-config python-setuptools python-wheel))
(inputs
(list python-pygobject
gtk+
diff --git a/gnu/packages/vim.scm b/gnu/packages/vim.scm
index d58b022123..a0c738e768 100644
--- a/gnu/packages/vim.scm
+++ b/gnu/packages/vim.scm
@@ -65,6 +65,7 @@
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
+ #:use-module (gnu packages python-build)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages ruby)
#:use-module (gnu packages serialization)
@@ -935,7 +936,8 @@ through its msgpack-rpc API.")
(base32
"00kxlb3f1k7iaxzpsr07scavmnyg8c1jmicmr13mfk2lcdac6g2b"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-psutil python-pynvim))
+ (propagated-inputs (list python-psutil python-pynvim python-setuptools))
+ (native-inputs (list python-wheel))
(home-page "https://github.com/mhinz/neovim-remote";)
(synopsis "Control nvim processes using `nvr` commandline tool")
(description "This package provide a `nvr` command, which can open File in
diff --git a/guix/build-system/pyproject.scm b/guix/build-system/pyproject.scm
index 2a2c3af3f3..94b9d79692 100644
--- a/guix/build-system/pyproject.scm
+++ b/guix/build-system/pyproject.scm
@@ -52,7 +52,12 @@
"Return the default Python package."
;; Lazily resolve the binding to avoid a circular dependency.
(let ((python (resolve-interface '(gnu packages python))))
- (module-ref python 'python-toolchain)))
+ ;; We are using python-sans-pip-wrapper, because it does not contain
+ ;; setuptools. This allows us to skip the dependency on setuptools for
+ ;; packages which don’t need it. And it allows us to more easily swap
+ ;; out setuptools if a different version is required.
+ ;; Using python-toolchain here might cause dependency cycles.
+ (module-ref python 'python-sans-pip-wrapper)))
(define sanity-check.py
(search-auxiliary-file "python/sanity-check.py"))
- branch pyproject-toml created (now b3726639df), guix-commits, 2023/08/02
- 02/08: build-system/python: Ignore symlinks when changing mtime., guix-commits, 2023/08/02
- 05/08: guix: toml: Add TOML parser., guix-commits, 2023/08/02
- 06/08: build-system/pyproject: Use TOML parser., guix-commits, 2023/08/02
- 01/08: build-system/pyproject: Use python-sans-pip-wrapper as default-python.,
guix-commits <=
- 03/08: gnu: criu: Change file mtimes to fix build., guix-commits, 2023/08/02
- 04/08: gnu: sssd: Change file mtimes to fix build., guix-commits, 2023/08/02
- 07/08: gnu: python-pytest-xdist: Disable failing test., guix-commits, 2023/08/02
- 08/08: guix: pyproject-build-system: Default configure-flags to empty dictionary., guix-commits, 2023/08/02