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branch master updated: gnu: Add r-mousegastrulationdata.


From: guix-commits
Subject: branch master updated: gnu: Add r-mousegastrulationdata.
Date: Mon, 28 Aug 2023 04:20:22 -0400

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rekado pushed a commit to branch master
in repository guix.

The following commit(s) were added to refs/heads/master by this push:
     new cf941786ee gnu: Add r-mousegastrulationdata.
cf941786ee is described below

commit cf941786eea468e28977437b881d84c2c2a66e66
Author: Navid Afkhami <navid.afkhami@mdc-berlin.de>
AuthorDate: Thu Aug 24 13:28:28 2023 +0000

    gnu: Add r-mousegastrulationdata.
    
    * gnu/packages/bioconductor.scm (r-mousegastrulationdata): New variable.
    
    Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
---
 gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1b62837bbc..0e01f3115d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1708,6 +1708,37 @@ gene expression indicate a role for enhancer priming in 
immune response\", publi
 in Nature Genetics, January 2018.")
     (license license:gpl2+)))
 
+(define-public r-mousegastrulationdata
+  (package
+    (name "r-mousegastrulationdata")
+    (version "1.14.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "MouseGastrulationData" version
+                                     'experiment))
+              (sha256
+               (base32
+                "155kci5isq7mlbvv8mdl2jjpafm3pbv1likhls70aa746spr1h17"))))
+    (properties `((upstream-name . "MouseGastrulationData")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-biocgenerics
+                             r-bumpymatrix
+                             r-experimenthub
+                             r-s4vectors
+                             r-singlecellexperiment
+                             r-spatialexperiment
+                             r-summarizedexperiment))
+    (native-inputs (list r-knitr))
+    (home-page "https://github.com/MarioniLab/MouseGastrulationData";)
+    (synopsis
+     "Single-Cell omics data across mouse gastrulation and early 
organogenesis")
+    (description
+     "This package provides processed and raw count data for single-cell RNA
+sequencing.  In addition, this package offers single-cell ATAC-seq, and
+@code{seqFISH} (spatial transcriptomic) experiments performed along a
+timecourse of mouse gastrulation and early organogenesis.")
+    (license license:gpl3)))
+
 (define-public r-minfidata
   (package
     (name "r-minfidata")



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