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02/02: gnu: Remove r-genomegraphs.
From: |
guix-commits |
Subject: |
02/02: gnu: Remove r-genomegraphs. |
Date: |
Fri, 3 Nov 2023 14:12:42 -0400 (EDT) |
rekado pushed a commit to branch r-updates
in repository guix.
commit 02e433a5c118cba75f243aae86f90bf5e85cf86f
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Fri Nov 3 19:11:54 2023 +0100
gnu: Remove r-genomegraphs.
This package had been removed from Bioconductor with release 3.11.
* gnu/packages/bioconductor.scm (r-genomegraphs): Remove variable.
Change-Id: I73cc8cc8546089d91212176939b8c0c0a7afc309
---
gnu/packages/bioconductor.scm | 28 ----------------------------
1 file changed, 28 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 0ee0061872..a92f187a95 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -18466,34 +18466,6 @@ model, amino acid change consequence, minor allele
frequencies across human
populations, splice site strength, conservation, etc.")
(license license:artistic2.0)))
-(define-public r-genomegraphs
- (package
- (name "r-genomegraphs")
- (version "1.46.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "GenomeGraphs" version))
- (sha256
- (base32
- "05vavhz936v7cknig2f2mn3fd9fiy54r3swlvifpawramblp1ags"))))
- (properties `((upstream-name . "GenomeGraphs")))
- (build-system r-build-system)
- (propagated-inputs
- (list r-biomart))
- (home-page "https://bioconductor.org/packages/GenomeGraphs/")
- (synopsis "Plotting genomic information from Ensembl")
- (description
- "Genomic data analyses requires integrated visualization of known genomic
-information and new experimental data. GenomeGraphs uses the biomaRt package
-to perform live annotation queries to Ensembl and translates this to e.g.
-gene/transcript structures in viewports of the grid graphics package. This
-results in genomic information plotted together with your data. Another
-strength of GenomeGraphs is to plot different data types such as array CGH,
-gene expression, sequencing and other data, together in one plot using the
-same genome coordinate system.")
- (license license:artistic2.0)))
-
(define-public r-variancepartition
(package
(name "r-variancepartition")