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01/03: gnu: Remove r-sigpathway.


From: guix-commits
Subject: 01/03: gnu: Remove r-sigpathway.
Date: Fri, 3 Nov 2023 16:49:53 -0400 (EDT)

rekado pushed a commit to branch r-updates
in repository guix.

commit af3d6500cfc3f8aae27d3bb14125d43f83409bf6
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Fri Nov 3 21:15:12 2023 +0100

    gnu: Remove r-sigpathway.
    
    This package has been removed with the release of Bioconductor 3.18.
    
    * gnu/packages/bioconductor.scm (r-sigpathway): Remove variable.
    
    Change-Id: I5cb9d938f370aa28b196f9cea95fb6024c2e6e37
---
 gnu/packages/bioconductor.scm | 22 ----------------------
 1 file changed, 22 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1d87325a7e..523b7e7ee9 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -14736,28 +14736,6 @@ mRNA levels or buffering, a mechanism regulating 
translational efficiency so
 that protein levels remain constant despite fluctuating total mRNA levels.")
     (license license:gpl3)))
 
-(define-public r-sigpathway
-  (package
-    (name "r-sigpathway")
-    (version "1.66.2")
-    (source
-      (origin
-        (method url-fetch)
-        (uri (bioconductor-uri "sigPathway" version))
-        (sha256
-          (base32
-            "0k86hlz7zbbw7559bd2sl59pr441kihgwvg8nr75mj8d50n783sy"))))
-    (properties `((upstream-name . "sigPathway")))
-    (build-system r-build-system)
-    (home-page "https://www.pnas.org/cgi/doi/10.1073/pnas.0506577102";)
-    (synopsis "Pathway analysis")
-    (description
-     "This package is used to conduct pathway analysis by calculating the NT_k
-and NE_k statistics in a statistical framework for determining whether a
-specified group of genes for a pathway has a coordinated association with a
-phenotype of interest.")
-    (license license:gpl2)))
-
 (define-public r-fcscan
   (package
     (name "r-fcscan")



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