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branch gnome-team updated (1c41971e72 -> 72e886328c)
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From: |
guix-commits |
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Subject: |
branch gnome-team updated (1c41971e72 -> 72e886328c) |
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Date: |
Sat, 4 Nov 2023 02:50:44 -0400 (EDT) |
lilyp pushed a change to branch gnome-team
in repository guix.
from 1c41971e72 gnu: Add calls.
add 2fbb5398a3 gnu: gcc@10: Update to 10.5.0.
add 356ca40c89 gnu: cmake-minimal: Remove ‘hidden’ property.
add a1ac534f8a gnu: gnutls@3.8: Do not rely expect ‘PATH_MAX’ definition
on GNU/Hurd.
add 81b293ef34 gnu: kokkos: Restrict builds to 64-bit architectures.
add 2861c70b9e gnu: Add emacs-nerd-icons.
add 1a0bff3971 gnu: Add emacs-imenu-anywhere.
add d146109d68 gnu: Fix python-tortoise-orm's sanity-check.
add 1566c9cae1 gnu: python-pypika-tortoise: Update to 0.1.6.
add 4d748d344b gnu: python-tortoise-orm: Update to 0.20.0.
add a89d08496d gnu: monolith: Update to 2.7.0.
add d871569955 gnu: crawl: Update to 0.30.1.
add 5122822ebf gnu: pyzo: Update to 4.13.3.
add 1b354d785c gnu: tome4: Update to 1.7.6.
add 571ee7903c gnu: tome4: Improve package style.
add db31cbc59e gnu: xournalpp: Update to 1.2.2.
add be223a9451 gnu: nauty: Update to 2.8.6.
add 7383d15641 gnu: clang-python-bindings: Embed version string.
add 62ff322ea9 gnu: Add rust-ogg-0.8.
add 10717c59ae gnu: Add rust-owning-ref-0.3.
add fc62986a50 gnu: Add rust-parking-lot-core-0.2.
add bcbcba19a8 gnu: Add rust-rental-0.5.
add b19590a603 gnu: Add rust-al-sys-0.6.
add 0e274a23b2 gnu: Add rust-parking-lot-0.4.
add 674bc36794 gnu: Add rust-alto-3.
add 6b017ed5dd gnu: Add rust-lewton-0.10.
add 69c11e51ca gnu: Add rust-alsa-sys-0.3.
add a0640794b4 gnu: Add rust-alsa-0.7.
add d44054ed3c gnu: Add rust-alsa-0.6
add 82d66eb5a3 gnu: Add rust-coreaudio-sys-0.2.
add 07c86582e9 gnu: Add rust-coreaudio-rs-0.10.
add fe53a28575 gnu: Add rust-ndk-sys-0.3.
add 3f070d8c03 gnu: Add rust-ndk-0.6.
add b0ca63f9d9 gnu: Add rust-ndk-glue-0.6.
add c46a347b4a gnu: Add rust-fetch-unroll-0.3.
add 319dc4986a gnu: Add rust-oboe-sys-0.4.
add 7f358fa850 gnu: Add rust-oboe-0.4.
add c48cf93a0e gnu: Add rust-stdweb-0.1.
add 97e865213d gnu: Add rust-bindgen-0.56.
add 74ea7a356f gnu: Add rust-asio-sys-0.2.
add 79f7e8a987 gnu: Add rust-jack-sys-0.2.
add 5a4642d08e gnu: Add rust-jack-0.8.
add 4d68caa26c gnu: Add rust-hound-3.
add ad73edfc0a gnu: Add rust-ringbuf-0.2.
add cb31c29f48 gnu: Add rust-cpal-0.13.
add 88660d628b gnu: Add rust-option-operations-0.4.
add 2f0e11127f gnu: Add rust-muldiv-1.
add 069a5577e5 gnu: Add rust-pretty-hex-0.3.
add 3a0b15b829 gnu: Add rust-gstreamer-sys-0.18.
add f15bfd49e6 gnu: Add rust-gstreamer-0.18.
add a4454aa4d2 gnu: Add rust-gstreamer-base-sys-0.18.
add b39e6508b7 gnu: Add rust-gstreamer-base-0.18.
add 93d45b8a07 gnu: Add rust-gstreamer-app-sys-0.18.
add 179ecc41a0 gnu: Add rust-gstreamer-app-0.18.
add bc4196fa90 gnu: Add rust-array-init-2.
add 0579cd4e74 gnu: Add rust-gstreamer-audio-sys-0.18.
add 29aa50b7c3 gnu: Add rust-gstreamer-audio-0.18.
add 8b6ba317ce gnu: Add rust-jack-sys-0.4.
add 18bf91a49c gnu: Add rust-jack-0.10.
add effda36c0f gnu: rust-libpulse-sys-1: Update to 1.21.0.
add f06f57d85c gnu: Add rust-libpulse-simple-sys-1.
add 97b99a28c8 gnu: rust-libpulse-binding-2: Update to 2.28.1.
add 807bd1ac44 gnu: Add rust-libpulse-simple-binding-2.
add ae6a5987a6 gnu: Add rust-portaudio-sys-0.1.
add a7fb63cbfa gnu: Add rust-portaudio-rs-0.3.
add 2e5cf709e1 gnu: Add rust-claxon-0.4.
add 41a1f3bd2d gnu: Add rust-slice-deque-0.3.
add 604fbc07ec gnu: Add rust-minimp3-sys-0.3.
add 991e8d39a6 gnu: Add rust-minimp3-0.5.
add 1499ee666d gnu: Add rust-symphonia-core-0.4.
add 1eecb74d3b gnu: Add rust-symphonia-metadata-0.4.
add d5f4577a4f gnu: Add rust-symphonia-utils-xiph-0.4.
add ffed57b028 gnu: Add rust-symphonia-bundle-flac-0.4.
add 66cd50f8f2 gnu: Add rust-symphonia-bundle-mp3-0.4.
add 4917042a49 gnu: Add rust-symphonia-codec-aac-0.4.
add 3d0e0d7dec gnu: Add rust-symphonia-code-pcm-0.4
add f96936193b gnu: Add rust-symphonia-codec-vorbis-0.4.
add 5e140b7839 gnu: Add rust-symphonia-format-iosmp4-0.4.
add 52b609f5b9 gnu: Add rust-symphonia-format-ogg-0.4.
add 4f88b3aaf6 gnu: Add rust-symphonia-format-wav-0.4.
add 188e08e779 gnu: Add rust-symphonia-0.4.
add 153b63134d gnu: Add rust-rodio-0.15.
add 81d7b81643 gnu: Add rust-librespot-playback-0.4.
add f8dfe85a36 gnu: rust-cpal-0.13: Accept any version of jack.
add bc1678abdb gnu: httpd: Update to 2.4.58. [security fixes]
add 957d4025c5 gnu: Add python-google-pasta.
add d62a613bcf gnu: emacs-slime: Update to 2.28-0.0cc2e73.
add 8ea21f7c91 gnu: cl-slime-swank: Update to 2.28-0.0cc2e73.
add d22d2a05c3 gnu: nyxt: Update to 3.9.1.
add 978b9619a8 doc: Move “System Troubleshooting Tips” below.
add 569c085927 doc: Mention Guix Home in “Getting Started”.
add 37b0ddbcb7 doc: cookbook: Suggest ‘guix shell’ as an alternative to
multiple profiles.
add 216f8ffff4 doc: cookbook: Add cross references to the manual regarding
manifests.
add 04215779ba gnu: guile-simple-zmq: Update to d25d186.
add 1f6babf0c4 gnu: tor: Update to 0.4.8.7.
add 2919b5ae31 gnu: Deprecate the "go-ipfs" variable.
add 6fd589898c gnu: go-ipfs: Update to 0.15.0.
add f3714b3d5f gnu: Add emacs-pacfiles-mode.
add 7e4324575c services: admin: Export rottlog-configuration accessors.
add 00747316ee gnu: icecat: Update to 115.4.0-guix0-preview1 [security
fixes].
add 1da091366a gnu: abcl: Update to 1.9.2.
add 9b42568da6 gnu: eisl: Update to 3.50.
add e0b94a4d27 gnu: gqrx: Update to 2.17.3.
add 62d2155cc2 gnu: guile-dsv: Update to 0.7.1.
add 0ab3b59149 gnu: mympd: Update to 12.1.1.
add 137ff33daf gnu: diffoscope: Update to 251.
add a0060934a5 gnu: curlie: Update to 1.7.2.
add 1e5ec9d853 gnu: hplip: Fix USB timeouts.
add 6fa7ed0411 gnu: emacs-exwm: Update to 0.28.
add 4b72bd264a gnu: emacs-doom-modeline: Update to 4.0.1.
add 50fa8bd0a3 gnu: picard: Update to 2.10.
add eb194aba18 gnu: python-versioneer: Update to 0.29.
add efe9e0ce0c gnu: lighttpd: Update to 1.4.72.
add c6d2bb9d0a gnu: gnuplot: Update to 5.4.9.
add aabfddbe8b gnu: Add r-ggdist.
add d461dd81cd gnu: Remove left-over python-pycrypto patches.
add fda8b9e8de gnu: r-gdata: Update to 3.0.0.
add bf3ec59b29 gnu: r-ggplot2: Update to 3.4.4.
add 565c643b74 gnu: r-httpuv: Update to 1.6.12.
add f1499ff35a gnu: Add r-deming.
add 1b9a0135fb gnu: Add python-jupyterlite-core.
add 617bca2ab0 gnu: Add python-jupyterlite-sphinx.
add 0618aaba01 gnu: python-sphinx-gallery: Update to 0.14.0.
add 136700181b gnu: Add python-assertpy.
add 8027b0a269 gnu: Add python-funsor.
add d371eeea1a gnu: r-covr: Update to 3.6.3.
add 5326f0c76e gnu: r-biomartr: Update to 1.0.6.
add 04cef141c4 gnu: r-metap: Update to 1.9.
add b6d07b7475 gnu: r-bwstest: Update to 0.2.3.
add 90806b5b8e gnu: r-v8: Update to 4.4.0.
add 0e36a85463 gnu: r-jqr: Update to 1.3.1.
add a56ae72724 gnu: r-rcppthread: Update to 2.1.6.
add 666bf3eb3a gnu: r-sp: Update to 2.1-1.
add 6b35095a23 gnu: r-drat: Update to 0.2.4.
add bf939c5f96 gnu: r-rpostgres: Update to 1.4.6.
add 9444c2301e gnu: r-ggrepel: Update to 0.9.4.
add 3f740ae9b9 gnu: r-useful: Update to 1.2.6.1.
add cedf4c882d gnu: r-aricode: Update to 1.0.3.
add 928edcfdb5 gnu: r-utf8: Update to 1.2.4.
add 20a3758c5c gnu: r-vctrs: Update to 0.6.4.
add 231d30a7c5 gnu: r-tinytex: Update to 0.48.
add 4526a8498c gnu: r-leaflet-providers: Update to 2.0.0.
add 618fc038ff gnu: r-trend: Update to 1.1.6.
add 3e42b56709 gnu: r-radiant-data: Update to 1.6.2.
add 20cf084fbc gnu: r-reticulate: Update to 1.34.0.
add d2123cdf77 gnu: r-factominer: Update to 2.9.
add 1b6d0256f5 gnu: r-officer: Update to 0.6.3.
add d89584767c gnu: r-insight: Update to 0.19.6.
add c3af1886d0 gnu: r-flextable: Update to 0.9.4.
add 9a0de65a7d gnu: r-cmplot: Update to 4.4.3.
add acdc02a1f1 gnu: r-precrec: Update to 0.14.4.
add 93903312d3 gnu: r-raster: Update to 3.6-26.
add d83a16c489 gnu: r-magick: Update to 2.8.1.
add 49b3b0f4be gnu: r-targets: Update to 1.3.2.
add 746e91bd8d gnu: r-quickjsr: Update to 1.0.7.
add 690a41b96c gnu: r-emmeans: Update to 1.8.9.
add b72169c62f gnu: r-ggeffects: Update to 1.3.2.
add fc95476c5d gnu: r-dotcall64: Update to 1.1-0.
add a43b7a986c gnu: r-spam: Update to 2.10-0.
add b2e973b7de gnu: r-wk: Update to 0.9.0.
add b9b85b0a47 gnu: r-bookdown: Update to 0.36.
add 750728d2a5 gnu: r-osqp: Update to 0.6.3.2.
add 756b75e3f5 gnu: r-sctransform: Update to 0.4.1.
add 3aa975363f gnu: r-systemfonts: Update to 1.0.5.
add 530abaa510 gnu: r-terra: Update to 1.7-55.
add 0d6bd45ee1 gnu: r-pmcmrplus: Update to 1.9.8.
add ea65462fba gnu: r-seewave: Update to 2.2.3.
add 949a3e89cd gnu: r-actuar: Update to 3.3-3.
add 0de67d2c56 gnu: r-proxyc: Update to 0.3.4.
add 8d44e935fe gnu: r-rstan: Update to 2.32.3.
add d1574a3a8f gnu: r-optimx: Update to 2023-10.21.
add ddca60deec gnu: r-spatstat-explore: Update to 3.2-5.
add 6262deac6a gnu: r-spatstat-model: Update to 3.2-8.
add a3f640f883 gnu: r-spatstat-utils: Update to 3.0-4.
add 5b1ffed4b0 gnu: r-spatstat-sparse: Update to 3.0-3.
add e6ed303fd1 gnu: r-spatstat-data: Update to 3.0-3.
add 4c8ada199d gnu: r-spatstat-geom: Update to 3.2-7.
add 45e9d9ca43 gnu: r-spatstat-random: Update to 3.2-1.
add 7c2969fd6e gnu: r-slider: Update to 0.3.1.
add e09ebb2227 gnu: r-tidyposterior: Update to 1.0.1.
add 7b2fd93f5e gnu: r-textshaping: Update to 0.3.7.
add 1cd877ce9d gnu: r-ragg: Update to 1.2.6.
add dfe5e040a1 gnu: r-qdapregex: Update to 0.7.8.
add c3afa50e90 gnu: r-rworldmap: Update to 1.3-8.
add 0405c7f1b9 gnu: r-rtweet: Update to 1.2.1.
add 6f3e77cd69 gnu: r-rsq: Update to 2.6.
add 6eab7ce6c0 gnu: r-paws-common: Update to 0.6.2.
add 49e6c03117 gnu: r-lattice: Update to 0.22-5.
add 31921b7037 gnu: r-rpart: Update to 4.1.21.
add d0b3712c6e gnu: r-gdtools: Update to 0.3.4.
add 99c4716c5d gnu: r-markdown: Update to 1.11.
add eee90d7500 gnu: r-plotly: Update to 4.10.3.
add fa849a177a gnu: r-prabclus: Update to 2.3-3.
add 2844f24e89 doc: cookbook: Fix a broken cross-reference.
add 6c894b7a1a gnu: Add passff.
add 6d7e181ba1 gnu: linux-libre@6: Enable Coreboot framebuffer support
(again).
add a7083cab3a gnu: swineherd: Update to 0.0.3.
add 2337666833 gnu: cups: Fix cross-compiling.
add 486dcafb45 gnu: Add emacs-corfu-candidate-overlay.
add dd3b9e84b9 utils: Add 'strip-for-target'.
add 33f5b747b4 gnu: fcode-utils: Fix cross-compilation.
add a69dec7149 gnu: Add rust-cbindgen-0.26.
add d366ca387f gnu: linux-libre 6.5: Update to 6.5.8.
add 8ed7512518 gnu: linux-libre 6.1: Update to 6.1.59.
add b96729e22d gnu: linux-libre 5.15: Update to 5.15.136.
add e7c8bdac93 teams: Add audio team.
add 9291370344 teams: Add myself to audio team.
add c11b9133d2 gnu: Add moonfish.
add fca99c89b8 gnu: Add guile-ts.
add eeb7f88934 gnu: Add emacs-treebundel.
add 8a7860d9d8 gnu: python-dm-tree: Update to 0.1.8.
add 7f07441b17 gnu: Add popf.
add c4eb5c6808 gnu: Add emacs-pddl-mode.
add 2ff8de3657 gnu: Add sdl2-gamecontrollerdb.
add 2de3004267 home: services: Fix regression in generated
‘on-first-login’ script.
add 67effc1560 grafts: Fix corner case involving multiple-output
derivations.
add b3ec2a0d37 environment: Honor ‘-s’ for guile-for-build.
add 9d4b720e1f packages: Add ‘system’ parameter for ‘set-guile-for-build’.
add 344e39c928 profiles: Hooks honor the #:system parameter of
‘profile-derivation’.
add 661672a7f8 environment: Parameterize ‘%graft?’ early on.
add 6eb147dc31 environment: Fix typo in error messages.
add ff1146fb4f tests: Adjust to cope with glibc graft.
add 55cd6b2e3a gnu: linux-libre 6.5: Update to 6.5.9.
add 26709726a8 gnu: linux-libre 6.1: Update to 6.1.60.
add b26526ea05 gnu: linux-libre 5.15: Update to 5.15.137.
add e672066097 gnu: linux-libre 5.10: Update to 5.10.199.
add 3701fdcc9a gnu: linux-libre 5.4: Update to 5.4.259.
add 0b7031f097 gnu: linux-libre 4.19: Update to 4.19.297.
add c3cf04d05b gnu: linux-libre 4.14: Update to 4.14.328.
add 0525a39c21 gnu: passff-host: Refactor builder.
add ed4f93356b gnu: parallel: Update to 20231022.
add 46b981d18d gnu: Add gerbera.
add beb8365e37 gnu: gccgo: Add note about provided go version.
add f093eecbbc gnu: Add gccgo-13.
add 84fbfa82af build-system/go: Use gccgo when go isn't supported.
add 4dfbc53668 gnu: custom-gcc: Set upstream name.
add 7164f2b812 gnu: iotop: Update to 1.25.
add 72d9a5d7dd gnu: linux-libre 6.5: Update deblob scripts version hash.
add b6e8d587c4 gnu: opensmtpd: Update to 7.4.0p0.
add 3e968af472 gnu: retroarch: Update to 1.16.0.3.
add b4b7169839 gnu: retroarch: Use more system libraries.
add f0222fb37e gnu: retroarch: Use latest ffmpeg.
add c03a44f755 gnu: retroarch: Remove input labels.
add 2b5c6e1a41 gnu: godot: Update to 4.1.2.
add 800ed532d2 gnu: emacs-julia-mode: Exclude tests that fail with Emacs
29.
add 1dae566182 gnu: emacs-julia-mode: Update to 0.4-0.7a8c868.
add 26565f1bc8 gnu: passff-host: Fix builder issues.
add e7f7bb0af5 gnu: cuirass: Update to 1.2.0.
add 593a2e6354 gnu: file-systems: Add xenfs to %pseudo-file-system-types.
add 642769707c gnu: nghttp2: Replace with 1.57.0.
add db6b00795a gnu: dezyne: Update to 2.17.7.
add 5d79012073 gnu: Add r-voltron.
add 0fcbca2721 gnu: Add ffmpeg-progress-yield.
add a0eb6652b3 gnu: Add ffmpeg-normalize.
add 6127283151 gnu: Add python-ddlparse.
add db5c83e83b gnu: Add aerich.
add 9524ff9f3a gnu: Add python-online-judge-api-client.
add 789ef6837f gnu: Add online-judge-tools.
add 549d7ce3b3 gnu: Add r-consort.
add a85cbaa437 gnu: ansible-core: Update to 2.15.5 and fix tests.
add 4af23bc03c gnu: Remove python-resolvelib@0.5.
add 85451b38dd gnu: ansible: Update to 8.5.0.
add 500eee9c84 gnu: labwc: Update to 0.6.5.
add 4d52378daa gnu: cockatrice: Update to 2.9.0.
add 5746d043a6 gnu: transmission: Update to 4.0.4.
add 6797aac408 gnu: Add static-abseil-cpp.
add f330920a14 gnu: python-dm-tree: Use static abseil-cpp.
add 7e9783b2ab gnu: Add python-ml-collections.
add e49fdc231b Revert "gnu: linux-libre@6: Enable Coreboot framebuffer
support (again)."
add b71c7c472a Revert "gnu: opensmtpd: Update to 7.4.0p0."
add 5cbb0b15cc gnu: coturn: Update to 4.6.2.
add c0895371c5 gnu: lvm2: Remove systemd rule.
add d24c1078d2 gnu: Add r-r3cseq.
add 192514e869 gnu: Add r-r4rna.
add f123b38090 gnu: Add r-nistunits.
add 48b2478067 gnu: Add r-celestial.
add 91ba3ea8eb gnu: Add r-magicaxis.
add b538ce0c60 gnu: Add r-relations.
add 4903e70993 gnu: Add r-profmem.
add a8680f59e3 gnu: Add r-bench.
add e8cd556a7c gnu: Add r-piano.
add 7170720e48 gnu: Add r-coregx.
add a0a377fdd6 gnu: Add r-radiogx.
add 5e7f27d6ca gnu: opensmtpd: Update to 7.4.0p0 (bis).
add c82c6807e8 gnu: Add python-radio-beam.
add ea2e0eb36b gnu: Add python-pyavm.
add 4b1dce7185 gnu: Add python-pyregion.
add c1e3ad850d gnu: Add python-aplpy.
add 5e5547d1b3 gnu: Add python-spectral-cube.
add 6318e7a851 gnu: python-spectral-cube: Update to 0.6.3.
add d96a9c7473 gnu: python-radio-beam: Update to 0.3.6.
add e82b700228 gnu: b43-tools: Use make-flags.
add dfd3934b6b gnu: r-rsqlite: Update to 2.3.2.
add a9ee95aec1 gnu: r-htmltable: Update to 2.4.2.
add 221b9422fc gnu: r-abn: Update to 3.0.2.
add 03c1f71501 gnu: r-consort: Update to 1.2.1.
add 8e44a14be6 gnu: r-poorman: Update to 0.2.7.
add e11a490138 gnu: r-mbess: Update to 4.9.3.
add d941cec521 gnu: r-lambertw: Update to 0.6.9.
add 62ad4b2566 gnu: r-rbibutils: Update to 2.2.16.
add d7244ece08 gnu: r-wrs2: Update to 1.1-5.
add 05e2f170f7 gnu: r-performance: Update to 0.10.8.
add 2fec2b0a7a gnu: r-gridpattern: Update to 1.1.1.
add d034d0a1a0 gnu: r-grimport2: Update to 0.3-1.
add 8ab1ea6850 gnu: r-polspline: Update to 1.1.24.
add 8aafa8bd45 gnu: r-sampling: Update to 2.10.
add 199f6a9967 gnu: r-rintrojs: Update to 0.3.3.
add bd15e8babf gnu: r-adagio: Update to 0.9.2.
add 8638f87510 gnu: r-posterior: Update to 1.5.0.
add 12167e57e8 gnu: r-spatstat-linnet: Update to 3.1-3.
add d0013cb066 gnu: r-spatstat: Update to 3.0-7.
add 75db05d7db gnu: r-rfast: Update to 2.0.9.
add a14e534dbd gnu: r-seuratobject: Update to 5.0.0.
add 4f4ab05dc4 gnu: r-strex: Update to 1.6.1.
add e2d4dd5e1c gnu: r-knitr: Update to 1.45.
add 76a12b07d1 gnu: r-dbplyr: Update to 2.4.0.
add 90a8594c7b gnu: r-checkmate: Update to 2.3.0.
add 0858b9c472 gnu: r-withr: Update to 2.5.2.
add 4254269ad5 gnu: r-logspline: Update to 2.1.21.
add b963bf6b1d gnu: python-baltica: Add missing R inputs.
add 3991d9e4d9 Revert "gnu: lvm2: Remove systemd rule."
add 938a47c86d nls: Update translations.
add c95104c2e9 doc: contributiong: Fix ref usage.
add a96f1c1bc0 teams.scm: Add file-local variable prop line for the mode.
add 0647f308b4 gnu: r-rjava: Use OpenJDK 11.
add a5c7ceda0a gnu: emacs-org-contrib: Remove dependency on emacs-cider.
add 1ebc1651a6 gnu: emacs-clojure-mode: Update to 5.18.0.
add 7c2d36d014 gnu: emacs-clj-refactor: Update to 3.10.0.
add 0f2ec2117b gnu: emacs-cider: Update to 1.9.0.
add f5346094f0 gnu: emacs-cider: Include enrich-classpath wrapper scripts.
add 64dbce8381 gnu: Add r-nestedcv.
add 28ebbe2be8 gnu: Add r-matrixtests.
add e20ef7d2d1 gnu: dragonfly-reverb: Update to 3.2.10.
add 1853fd9c2f gnu: strawberry: Update to 1.0.21.
add 399cd64bc9 gnu: asciinema: Update to 2.4.0.
add a4ec0c6ca0 gnu: emacs-mastodon: Update to 1.0.13.
add 93b8d2e730 gnu: wlr-randr: Update to 0.3.1.
add 5378149acc gnu: msmtp: Update to 1.8.25.
add 4471cfd099 gnu: emacs-ox-rss: Update upstream URL.
add ada7e0d042 gnu: wine-minimal: Update to 8.18.
add 809f461ec1 gnu: foot: Update to 1.16.2.
add 9024524de1 gnu: guile-netlink: Update to 1.2.1.
add 66ff9c82a3 gnu: neovim: Update to 0.9.4.
add ada2152893 gnu: go-github-com-hjson-hjson-go: Update to 4.3.1.
add c9a7cbf0b7 gnu: syncthing: Update to 1.25.0.
add 021b222cda gnu: mupdf: Update to 1.23.4.
add 6ae8fd7aa7 gnu: cmark-gfm: Update to 0.29.0.gfm.13.
add c9361460de gnu: Add r-miamiplot.
add 2059b9fbe0 system: vm: Include the cirrus driver in the initrd.
add 7a14f9365a guix: Upgrade to Bioconductor 3.18.
add f80de2f03f gnu: Add r-metabocoreutils.
add bbe7ea0d27 gnu: Add r-sparsearray.
add 4f85beac2d gnu: Add r-msexperiment.
add 75ce5b0466 gnu: Add r-collapse.
add 48bf30e3b1 gnu: Add r-fancova.
add 6304d3cce6 gnu: Add r-mpo-db.
add bcf0ecd1ec gnu: Add r-hpo-db.
add 6ea450f390 gnu: r-debcam: Update to 1.20.0.
add d08d58d828 gnu: r-abarray: Update to 1.70.0.
add 7e7d075194 gnu: r-absseq: Update to 1.56.0.
add de5c088e06 gnu: r-adacgh2: Update to 2.42.0.
add 2662a6af48 gnu: r-adam: Update to 1.18.0.
add fc9baf4ad2 gnu: r-adamgui: Update to 1.18.0.
add 2f0f6284d1 gnu: r-adimpute: Update to 1.12.0.
add c02bc41c68 gnu: r-adsplit: Update to 1.72.0.
add 4d0c23545b gnu: r-affixcan: Update to 1.20.0.
add 8ea9b315fd gnu: r-affyilm: Update to 1.54.0.
add 14d87c1819 gnu: r-affylmgui: Update to 1.76.0.
add 97b1261e63 gnu: r-affyplm: Update to 1.78.0.
add e3acce66d9 gnu: r-affyrnadegradation: Update to 1.48.0.
add a8212a42d9 gnu: r-agdex: Update to 1.50.0.
add e628902ae8 gnu: r-aggregatebiovar: Update to 1.12.0.
add ecd66e4010 gnu: r-agilp: Update to 3.34.0.
add ac4e8f6cfd gnu: r-adductomicsr: Update to 1.18.0.
add 77d2e3167d gnu: r-aims: Update to 1.34.0.
add 4658cffbfd gnu: r-airpart: Update to 1.10.0.
add 6f7723c3ce gnu: r-amountain: Update to 1.28.0.
add 84e9f46720 gnu: r-amplican: Update to 1.24.0.
add 578489abe5 gnu: r-amaretto: Update to 1.18.0.
add 4771d5687c gnu: r-anaquin: Update to 2.26.0.
add 25da6c744e gnu: r-ancombc: Update to 2.4.0.
add 4226d5138b gnu: r-annotationhubdata: Update to 1.32.0.
add e2c41d2c65 gnu: r-anvil: Update to 1.14.0.
add 99a2acb5ab gnu: r-aldex2: Update to 1.34.0.
add dc6a5a7045 gnu: r-alevinqc: Update to 1.18.0.
add 5441a7cd9e gnu: r-alphabeta: Update to 1.16.0.
add 00dabe4d4f gnu: r-alpsnmr: Update to 4.4.0.
add d79c200c1e gnu: r-altcdfenvs: Update to 2.64.0.
add f625fab931 gnu: r-aneufinder: Update to 1.30.0.
add 79d50ddc44 gnu: r-annmap: Update to 1.44.0.
add 4b6dfa6785 gnu: r-antiprofiles: Update to 1.42.0.
add e79d0a54b5 gnu: r-arrayexpress: Update to 1.62.0.
add 637217271f gnu: r-arrayqualitymetrics: Update to 3.58.0.
add f1b4c1eaec gnu: r-arraymvout: Update to 1.60.0.
add fc79ff45b1 gnu: r-arrayquality: Update to 1.80.0.
add dc87880cb2 gnu: r-asafe: Update to 1.28.0.
add 67db607930 gnu: r-aseb: Update to 1.46.0.
add 9209b772b5 gnu: r-asgsca: Update to 1.36.0.
add fa5b2b5dbc gnu: r-asics: Update to 2.18.0.
add 2688eb505d gnu: r-aspli: Update to 2.12.0.
add 42dea0bd0a gnu: r-assessorf: Update to 1.20.0.
add 46b96b9383 gnu: r-asset: Update to 2.20.0.
add 74d22e52ce gnu: r-atena: Update to 1.8.0.
add e1487a6e2a gnu: r-atsnp: Update to 1.18.0.
add 601f91b94d gnu: r-attract: Update to 1.54.0.
add 35fe2b495d gnu: r-awfisher: Update to 1.16.0.
add 319d9c6cd3 gnu: r-awst: Update to 1.10.0.
add f93200960b gnu: r-baalchip: Update to 1.28.0.
add 3eb6468e63 gnu: r-basespacer: Update to 1.46.0.
add e777951d2b gnu: r-bader: Update to 1.40.0.
add caa56d8e98 gnu: r-badregionfinder: Update to 1.30.0.
add 7bd373b25e gnu: r-bambu: Update to 3.4.0.
add 70f14dd31e gnu: r-bandits: Update to 1.18.0.
add fed0d240b5 gnu: r-banocc: Update to 1.26.0.
add 268cf54fbf gnu: r-barcodetrackr: Update to 1.10.0.
add 278a436a00 gnu: r-biocversion: Update to 3.18.0.
add 44765e6f2c gnu: r-biocgenerics: Update to 0.48.1.
add c2460ad512 gnu: r-breakpointr: Update to 1.20.0.
add 59798d25e2 gnu: r-cardelino: Update to 1.4.0.
add 570177be67 gnu: r-cellid: Update to 1.10.0.
add 09a6c19465 gnu: r-coregx: Update to 2.6.0.
add 352f4079d3 gnu: r-coverageview: Update to 1.40.0.
add 8d8f9903b1 gnu: r-cummerbund: Update to 2.44.0.
add 3f815da53c gnu: r-dama: Update to 1.74.0.
add 11631558c6 gnu: r-damefinder: Update to 1.14.0.
add 33fe5a6f94 gnu: r-dearseq: Update to 1.14.0.
add fd6ec75189 gnu: r-decipher: Update to 2.30.0.
add 2e0680f286 gnu: r-decomptumor2sig: Update to 2.18.0.
add 4e8df83d62 gnu: r-deconrnaseq: Update to 1.44.0.
add 5422b1eb27 gnu: r-decontam: Update to 1.22.0.
add ce196875f5 gnu: r-deconvr: Update to 1.8.0.
add 2b28a41667 gnu: r-decoupler: Update to 2.8.0.
add 6ef7931223 gnu: r-deepsnv: Update to 1.48.0.
add 63c1990700 gnu: r-degreport: Update to 1.38.0.
add c5e614c7eb gnu: r-delayedarray: Update to 0.28.0.
add 073db5d4b2 gnu: r-densvis: Update to 1.12.0.
add 96060bcb06 gnu: r-derfinder: Update to 1.36.0.
add 00c73d58e7 gnu: r-derfinderhelper: Update to 1.36.0.
add 965fecac9b gnu: r-drimseq: Update to 1.30.0.
add 736217fae0 gnu: r-dropletutils: Update to 1.22.0.
add ea1d58bf25 gnu: r-dyndoc: Update to 1.80.0.
add e061d0d925 gnu: r-bluster: Update to 1.12.0.
add 76f03bca61 gnu: r-ideoviz: Update to 1.37.0.
add 4d978fcd17 gnu: r-infercnv: Update to 1.18.0.
add 71ef609861 gnu: r-iranges: Update to 2.36.0.
add aae891dad3 gnu: r-isoformswitchanalyzer: Update to 2.2.0.
add 6d4396aa7a gnu: r-italics: Update to 2.62.0.
add d04ab2829a gnu: r-nebulosa: Update to 1.12.0.
add d2f808e301 gnu: r-affy: Update to 1.80.0.
add dde158c631 gnu: r-affycomp: Update to 1.78.0.
add c849ee92f6 gnu: r-affycontam: Update to 1.60.0.
add 6f51787d5f gnu: r-affyio: Update to 1.72.0.
add d79336aa5c gnu: r-affxparser: Update to 1.74.0.
add beafd8ef50 gnu: r-annotate: Update to 1.80.0.
add 4b4ecae2c9 gnu: r-annotationdbi: Update to 1.64.0.
add 53cd33068a gnu: r-annotationfilter: Update to 1.26.0.
add 3b9d98df74 gnu: r-annotationforge: Update to 1.44.0.
add 81087f7b83 gnu: r-annotationhub: Update to 3.10.0.
add b1d1a0e9d3 gnu: r-aroma-light: Update to 3.32.0.
add 0b6f06b5bd gnu: r-bamsignals: Update to 1.34.0.
add 0f171c8bce gnu: r-biobase: Update to 2.62.0.
add 28d1244644 gnu: r-biomart: Update to 2.58.0.
add 7f14908649 gnu: r-biocparallel: Update to 1.36.0.
add 2fcc6e7ba6 gnu: r-biostrings: Update to 2.70.1.
add 1c103cad67 gnu: r-biovizbase: Update to 1.50.0.
add 257fe883e6 gnu: r-bsgenome: Update to 1.70.1.
add 53e9d43a83 gnu: r-category: Update to 2.68.0.
add 576f2079fc gnu: r-chipseeker: Update to 1.38.0.
add c4c119d304 gnu: r-chipseq: Update to 1.52.0.
add dae712d26d gnu: r-complexheatmap: Update to 2.18.0.
add f9206bb23b gnu: r-deseq2: Update to 1.42.0.
add 82a7530098 gnu: r-dexseq: Update to 1.48.0.
add d7a02f5bf5 gnu: r-diffcyt: Update to 1.22.0.
add bb2fd2549d gnu: r-dirichletmultinomial: Update to 1.44.0.
add eff815f296 gnu: r-dittoseq: Update to 1.14.0.
add 26eee94e13 gnu: r-edaseq: Update to 2.36.0.
add 91bd1e4bb2 gnu: r-edger: Update to 4.0.1.
add 5463d6e997 gnu: r-enhancedvolcano: Update to 1.20.0.
add 6f0023b8a4 gnu: r-enmix: Update to 1.38.01.
add 60b6dde680 gnu: r-ensembldb: Update to 2.26.0.
add cdb009029b gnu: r-fastseg: Update to 1.48.0.
add 149021491d gnu: r-gage: Update to 2.52.0.
add cdc6c83100 gnu: r-genefilter: Update to 1.84.0.
add 035d905385 gnu: r-geneoverlap: Update to 1.38.0.
add 9845ee6e36 gnu: r-genomation: Update to 1.34.0.
add dab13c9e14 gnu: r-genomeinfodb: Update to 1.38.0.
add 0c4c142cde gnu: r-genomicalignments: Update to 1.38.0.
add df588ca56e gnu: r-genomicdatacommons: Update to 1.26.0.
add 8fe366bda8 gnu: r-genomicfeatures: Update to 1.54.1.
add 2d2a79ca21 gnu: r-genomicfiles: Update to 1.38.0.
add 4cc5a259ca gnu: r-genomicranges: Update to 1.54.1.
add e7b0370c46 gnu: r-glad: Update to 2.66.0.
add b06f40836b gnu: r-globalancova: Update to 4.20.0.
add f8946a7316 gnu: r-globaltest: Update to 5.56.0.
add 844ea9ff66 gnu: r-gostats: Update to 2.68.0.
add cef824b9f4 gnu: r-gseabase: Update to 1.64.0.
add 135ebdd145 gnu: r-gsva: Update to 1.50.0.
add 7b39b6c668 gnu: r-harshlight: Update to 1.74.0.
add 4e5c14aae2 gnu: r-hpar: Update to 1.44.0.
add d3281df551 gnu: r-r3cseq: Update to 1.48.0.
add 8fab582215 gnu: r-r4rna: Update to 1.30.0.
add c333878ff5 gnu: r-radiogx: Update to 2.6.0.
add f246bfb448 gnu: r-raggedexperiment: Update to 1.26.0.
add e28ffb7341 gnu: r-rdisop: Update to 1.62.0.
add 3c8f3921f0 gnu: r-rhtslib: Update to 2.4.0.
add b535785eff gnu: r-impute: Update to 1.76.0.
add 2d821734f0 gnu: r-interactivedisplay: Update to 1.40.0.
add 4b85fc7175 gnu: r-interactivedisplaybase: Update to 1.40.0.
add c08b34c0e8 gnu: r-keggrest: Update to 1.42.0.
add 277cfebf79 gnu: r-lea: Update to 3.14.0.
add 01220bcd00 gnu: r-lfa: Update to 2.2.0.
add 3e7eeef0db gnu: r-limma: Update to 3.58.1.
add 7a12d712eb gnu: r-maaslin2: Update to 1.16.0.
add 35d10e3429 gnu: r-made4: Update to 1.76.0.
add 30cecc4883 gnu: r-makecdfenv: Update to 1.78.0.
add 9f7a451e6b gnu: r-manor: Update to 1.74.0.
add d485c6e39a gnu: r-maser: Update to 1.20.0.
add 9be6759f41 gnu: r-mdqc: Update to 1.64.0.
add b4421f7099 gnu: r-metagenomeseq: Update to 1.43.0.
add 7b4893ddb8 gnu: r-metaneighbor: Update to 1.22.0.
add 6faabe3a9f gnu: r-methylkit: Update to 1.28.0.
add b4b48541f9 gnu: r-mfuzz: Update to 2.62.0.
add 8288c11c51 gnu: r-mmuphin: Update to 1.16.0.
add db457fe95f gnu: r-muscat: Update to 1.16.0.
add a1e7f3f4c8 gnu: r-mutationalpatterns: Update to 3.12.0.
add baa4a2629e gnu: r-msa: Update to 1.34.0.
add 31291d7aa1 gnu: r-msnbase: Update to 2.28.0.
add 24a57583ae gnu: r-msnid: Update to 1.36.0.
add 376c30b09f gnu: r-mzid: Update to 1.40.0.
add 23379de4c9 gnu: r-mzr: Update to 2.36.0.
add 41f7fc3ef5 gnu: r-organism-dplyr: Update to 1.30.1.
add d02feac2f1 gnu: r-organismdbi: Update to 1.44.0.
add fab197151b gnu: r-oscope: Update to 1.32.0.
add 81172ff685 gnu: r-pcaexplorer: Update to 2.28.0.
add 409d6d340d gnu: r-pcamethods: Update to 1.94.0.
add fd0e3d812c gnu: r-pfamanalyzer: Update to 1.2.0.
add 42504ecfc8 gnu: r-piano: Update to 2.18.0.
add ff6b2e31c4 gnu: r-protgenerics: Update to 1.34.0.
add 45b4cdb52e gnu: r-rbgl: Update to 1.78.0.
add e8e0f0e5b9 gnu: r-rcas: Update to 1.28.2.
add 31d236ad8e gnu: r-regioner: Update to 1.34.0.
add 0e159537dd gnu: r-rhdf5: Update to 2.46.0.
add 68bdc0a860 gnu: r-rhdf5filters: Update to 1.14.0.
add 1e454c32d7 gnu: r-rsamtools: Update to 2.18.0.
add 2531eac414 gnu: r-rtcga: Update to 1.32.0.
add d08d8fa8a7 gnu: r-rtcgatoolbox: Update to 2.32.1.
add 0f43f41994 gnu: r-rtracklayer: Update to 1.62.0.
add bf3e9b2287 gnu: r-saturn: Update to 1.10.0.
add 96c6e377e6 gnu: r-scannotatr: Update to 1.8.0.
add bb24565a9f gnu: r-scdblfinder: Update to 1.16.0.
add f5e93e8bed gnu: r-scmap: Update to 1.24.0.
add 5fd85a62e0 gnu: r-scry: Update to 1.14.0.
add 61e1d2efca gnu: r-seqarray: Update to 1.42.0.
add 08fcb9423d gnu: r-seqlogo: Update to 1.68.0.
add 8cc5dee008 gnu: r-seqpattern: Update to 1.34.0.
add 0c949e4684 gnu: r-sesame: Update to 1.20.0.
add 19cc337424 gnu: r-shinymethyl: Update to 1.38.0.
add fecb7da1db gnu: r-shortread: Update to 1.60.0.
add f2d4fb112b gnu: r-simplifyenrichment: Update to 1.12.0.
add a6acba4a2d gnu: r-singscore: Update to 1.22.0.
add 3302942017 gnu: r-tcgautils: Update to 1.22.0.
add 4a0bfc3629 gnu: r-tkwidgets: Update to 1.80.0.
add 3ccfda4799 gnu: r-trackviewer: Update to 1.38.0.
add eafe0f33e5 gnu: r-transcriptr: Update to 1.30.0.
add d970fa6a92 gnu: r-trajectoryutils: Update to 1.10.0.
add 894a959520 gnu: r-scds: Update to 1.18.0.
add 5e36fcc1e6 gnu: r-slingshot: Update to 2.10.0.
add a78f026f27 gnu: r-spectra: Update to 1.12.0.
add 8ea882bb48 gnu: r-stager: Update to 1.24.0.
add 05062b3a92 gnu: r-stringdb: Update to 2.14.0.
add 3527647b1e gnu: r-structuralvariantannotation: Update to 1.18.0.
add c123daea71 gnu: r-summarizedexperiment: Update to 1.32.0.
add c8df5d8f95 gnu: r-survcomp: Update to 1.52.0.
add 972c874418 gnu: r-sva: Update to 3.50.0.
add 0b23c3e384 gnu: r-systempiper: Update to 2.8.0.
add b341a01aea gnu: r-topgo: Update to 2.54.0.
add 52922eac72 gnu: r-tximport: Update to 1.30.0.
add 01365740ea gnu: r-variantannotation: Update to 1.48.0.
add 246eac46a8 gnu: r-multtest: Update to 2.58.0.
add 1eb852ff06 gnu: r-cghcall: Update to 2.64.0.
add 44d9185cfb gnu: r-motifstack: Update to 1.46.0.
add 34c65d6f66 gnu: r-mixomics: Update to 6.26.0.
add a497dbaa05 gnu: r-rgreat: Update to 2.4.0.
add 505e9ca855 gnu: r-vsn: Update to 3.70.0.
add 5e41fdf824 gnu: r-xina: Update to 1.20.0.
add 5e6a4b0975 gnu: r-xmapbridge: Update to 1.60.0.
add 299fd237c3 gnu: r-xvector: Update to 0.42.0.
add c994a043c5 gnu: r-zlibbioc: Update to 1.48.0.
add 41340588c8 gnu: r-zellkonverter: Update to 1.12.0.
add 2b9d304070 gnu: r-geneplotter: Update to 1.80.0.
add 2b07d57f02 gnu: r-oligoclasses: Update to 1.64.0.
add ec76b47df3 gnu: r-oligo: Update to 1.66.0.
add 1f012cc06b gnu: r-qfeatures: Update to 1.12.0.
add 721c52eca7 gnu: r-quantsmooth: Update to 1.68.0.
add 9b9726239a gnu: r-qvalue: Update to 2.34.0.
add 79416c905f gnu: r-apcomplex: Update to 2.68.0.
add 41a5c3f69a gnu: r-apeglm: Update to 1.24.0.
add 41219277e1 gnu: r-greylistchip: Update to 1.34.0.
add f76b1ecf16 gnu: r-diffbind: Update to 3.12.0.
add cbf6c8c353 gnu: r-mbecs: Update to 1.6.0.
add e648d5ab5a gnu: r-mbkmeans: Update to 1.18.0.
add 413ebda52e gnu: r-multibac: Update to 1.12.0.
add e466895bcb gnu: r-graph: Update to 1.80.0.
add e42bd79949 gnu: r-ggtreeextra: Update to 1.12.0.
add 995fd0fb69 gnu: r-pepsnmr: Update to 1.20.0.
add 88a4c1ef40 gnu: r-chippeakanno: Update to 3.36.0.
add 56b23251f2 gnu: r-matrixgenerics: Update to 1.14.0.
add cbd1bdf433 gnu: r-marray: Update to 1.80.0.
add af7177b379 gnu: r-cghbase: Update to 1.62.0.
add 11b594314a gnu: r-qdnaseq: Update to 1.38.0.
add 89f04f09de gnu: r-bayseq: Update to 2.36.0.
add c7f6a7e802 gnu: r-chipcomp: Update to 1.32.0.
add a44c944971 gnu: r-riboprofiling: Update to 1.32.0.
add 89937f497b gnu: r-riboseqr: Update to 1.36.0.
add 3d30484b1c gnu: r-interactionset: Update to 1.30.0.
add 4dd7a424bf gnu: r-genomicinteractions: Update to 1.36.0.
add 256a5afa3f gnu: r-ctc: Update to 1.76.0.
add 1a27f050be gnu: r-goseq: Update to 1.54.0.
add 3e8ae47f0d gnu: r-glimma: Update to 2.12.0.
add e0031de95b gnu: r-glmgampoi: Update to 1.14.0.
add a5eefabd87 gnu: r-rots: Update to 1.30.0.
add 7aee11f63e gnu: r-plgem: Update to 1.74.0.
add 81d0dedf9a gnu: r-plyranges: Update to 1.22.0.
add 642b3c3e27 gnu: r-inspect: Update to 1.31.0.
add 9ac392fc93 gnu: r-dnabarcodes: Update to 1.32.0.
add f9b3ee2f5f gnu: r-ruvseq: Update to 1.36.0.
add 69bd0f8752 gnu: r-biocneighbors: Update to 1.20.0.
add b8daed53af gnu: r-scaledmatrix: Update to 1.10.0.
add a7cd80eaf1 gnu: r-treeio: Update to 1.26.0.
add 74253229f1 gnu: r-treesummarizedexperiment: Update to 2.10.0.
add 8aeaa84e2a gnu: r-ggtree: Update to 3.10.0.
add 1672a49c4e gnu: r-metapod: Update to 1.10.0.
add dd6e945cb4 gnu: r-biocsingular: Update to 1.18.0.
add 02ddd7963b gnu: r-destiny: Update to 3.16.0.
add 819eb5ca24 gnu: r-chipexoqual: Update to 1.26.0.
add c0ea127d3f gnu: r-dnacopy: Update to 1.76.0.
add 9e5d778400 gnu: r-ebseq: Update to 2.0.0.
add 5b36a69e0f gnu: r-karyoploter: Update to 1.28.0.
add 09d9d27c6a gnu: r-lpsymphony: Update to 1.30.0.
add 82d8784abe gnu: r-ihw: Update to 1.30.0.
add 1d4787f8fa gnu: r-icobra: Update to 1.30.0.
add 7af7d3d4e2 gnu: r-residualmatrix: Update to 1.12.0.
add 22b1839f1a gnu: r-batchelor: Update to 1.18.0.
add 0c92b1d860 gnu: r-mast: Update to 1.28.0.
add 1b63a91e57 gnu: r-monocle: Update to 2.30.0.
add 444871c0f2 gnu: r-sangerseqr: Update to 1.38.0.
add 005c3a7ec9 gnu: r-noiseq: Update to 2.46.0.
add 61a2dc87d8 gnu: r-scdd: Update to 1.26.0.
add dffab6110f gnu: r-scone: Update to 1.26.0.
add cb94125b4c gnu: r-geoquery: Update to 2.70.0.
add 54a13eff99 gnu: r-illuminaio: Update to 0.44.0.
add 9d69d64b46 gnu: r-siggenes: Update to 1.76.0.
add e2f2927666 gnu: r-bumphunter: Update to 1.44.0.
add 919fad614e gnu: r-bumpymatrix: Update to 1.10.0.
add c192f994c4 gnu: r-mia: Update to 1.10.0.
add a997efca8c gnu: r-microbiome: Update to 1.24.0.
add 3bc5dbe892 gnu: r-milor: Update to 1.10.0.
add f7152456ee gnu: r-minfi: Update to 1.48.0.
add 8dc6103399 gnu: r-missmethyl: Update to 1.36.0.
add e6f93e58c9 gnu: r-methylumi: Update to 2.48.0.
add e55a61949e gnu: r-lefser: Update to 1.11.5.
add 038df629a9 gnu: r-lumi: Update to 2.54.0.
add f1c930495b gnu: r-linnorm: Update to 2.26.0.
add 5c7985b3b7 gnu: r-ioniser: Update to 2.26.0.
add db11b1bbe0 gnu: r-tradeseq: Update to 1.16.0.
add c3d0f015cf gnu: r-varianttools: Update to 1.44.0.
add aa61c81823 gnu: r-heatplus: Update to 3.10.0.
add b3f89195e9 gnu: r-gosemsim: Update to 2.28.0.
add 520fc2a345 gnu: r-anota: Update to 1.50.0.
add 27dd42cc07 gnu: r-anota2seq: Update to 1.24.0.
add 7cca324d3b gnu: r-fcscan: Update to 1.16.0.
add 77f4a907b3 gnu: r-fgsea: Update to 1.28.0.
add 9dcb82f7e7 gnu: r-dose: Update to 3.28.0.
add 109a63f7b8 gnu: r-enrichedheatmap: Update to 1.32.0.
add 5342489b80 gnu: r-enrichplot: Update to 1.22.0.
add c112d7bdf0 gnu: r-clusterprofiler: Update to 4.10.0.
add c7d59ff365 gnu: r-clusterexperiment: Update to 2.22.0.
add 97a6b7b971 gnu: r-mlinterfaces: Update to 1.82.0.
add 7e82848893 gnu: r-annaffy: Update to 1.74.0.
add 17290efded gnu: r-a4core: Update to 1.50.0.
add b89491fcfb gnu: r-a4classif: Update to 1.50.0.
add c5a7e436a4 gnu: r-a4preproc: Update to 1.50.0.
add c6ad1d6186 gnu: r-a4reporting: Update to 1.50.0.
add d69276f7e2 gnu: r-a4base: Update to 1.50.0.
add d478ba2bfb gnu: r-a4: Update to 1.50.0.
add 0282bb3aa6 gnu: r-abseqr: Update to 1.20.0.
add d9ba7e918e gnu: r-bacon: Update to 1.30.0.
add e4772226b3 gnu: r-rgadem: Update to 2.50.0.
add 01612dd2a6 gnu: r-motifdb: Update to 1.44.0.
add dea0576013 gnu: r-motifbreakr: Update to 2.16.0.
add 7fe9a89707 gnu: r-genomicscores: Update to 2.14.1.
add e632f73afc gnu: r-atacseqqc: Update to 1.26.0.
add 29a09dbdef gnu: r-gofuncr: Update to 1.22.0.
add b107aaf47a gnu: r-annotationtools: Update to 1.76.0.
add 0eb64979aa gnu: r-allelicimbalance: Update to 1.40.0.
add 23c25f0423 gnu: r-aucell: Update to 1.24.0.
add ec2cd3861c gnu: r-ebimage: Update to 4.44.0.
add 0ba77ac5ae gnu: r-yamss: Update to 1.28.0.
add 5072f0664c gnu: r-gtrellis: Update to 1.34.0.
add d3550856ab gnu: r-somaticsignatures: Update to 2.38.0.
add 8d91d64009 gnu: r-yapsa: Update to 1.28.0.
add a05f9cbab2 gnu: r-gcrma: Update to 2.74.0.
add 92853c5e1a gnu: r-quantro: Update to 1.36.0.
add 385193c92b gnu: r-yarn: Update to 1.28.0.
add 8bb88c275f gnu: r-roar: Update to 1.38.0.
add c76e35ac50 gnu: r-massspecwavelet: Update to 1.68.0.
add 6ea628ec1c gnu: r-xcms: Update to 4.0.0.
add 4464ee09a8 gnu: r-wppi: Update to 1.10.0.
add bf2e150d5c gnu: r-wrench: Update to 1.20.0.
add e83637da77 gnu: r-wiggleplotr: Update to 1.26.0.
add 0c0d4e9d74 gnu: r-widgettools: Update to 1.80.0.
add 3393f89fdc gnu: r-webbioc: Update to 1.74.0.
add 9cd71a55e8 gnu: r-zinbwave: Update to 1.24.0.
add cd3f0aa976 gnu: r-zfpkm: Update to 1.24.0.
add 12a25de450 gnu: r-rbowtie2: Update to 2.8.0.
add f059ade231 gnu: r-progeny: Update to 1.24.0.
add 6b18a2b370 gnu: r-arrmnormalization: Update to 1.42.0.
add 77491d9dc4 gnu: r-biocfilecache: Update to 2.10.1.
add d2ee7821d1 gnu: r-iclusterplus: Update to 1.38.0.
add 0f4db0e2de gnu: r-rbowtie: Update to 1.42.0.
add e92cb01bc3 gnu: r-sgseq: Update to 1.36.0.
add 6a62e84948 gnu: r-rhisat2: Update to 1.18.0.
add a6c729f6ac gnu: r-quasr: Update to 1.42.1.
add ffccc882fa gnu: r-rqc: Update to 1.36.0.
add 633560c283 gnu: r-birewire: Update to 3.34.0.
add 69b935ebc1 gnu: r-multidataset: Update to 1.30.0.
add c73f59a9d2 gnu: r-ropls: Update to 1.34.0.
add d29c9b145b gnu: r-biosigner: Update to 1.30.0.
add bea6315bb8 gnu: r-annotatr: Update to 1.28.0.
add d1e907e41e gnu: r-rsubread: Update to 2.16.0.
add 8c7c2359f5 gnu: r-flowai: Update to 1.32.0.
add 196e98c19b gnu: r-consensusclusterplus: Update to 1.66.0.
add 10d2d6225d gnu: r-cytolib: Update to 2.14.0.
add bd5d74cbdf gnu: r-flowcore: Update to 2.14.0.
add 3ef5cbf874 gnu: r-flowmeans: Update to 1.62.0.
add 451730851d gnu: r-ncdfflow: Update to 2.48.0.
add 32a16be414 gnu: r-ggcyto: Update to 1.30.0.
add be37da9b54 gnu: r-flowviz: Update to 1.66.0.
add ca1998e47d gnu: r-flowclust: Update to 3.40.0.
add e6188fe703 gnu: r-rprotobuflib: Update to 2.14.0.
add d97e582d89 gnu: r-flowworkspace: Update to 4.14.0.
add 127590d8ad gnu: r-flowstats: Update to 4.14.0.
add 0d5d1163d7 gnu: r-opencyto: Update to 2.14.0.
add c9533f5df9 gnu: r-cytoml: Update to 2.14.0.
add a32a12ec27 gnu: r-flowsom: Update to 2.10.0.
add 93322f6240 gnu: r-depecher: Update to 1.18.0.
add d73af33e49 gnu: r-chicago: Update to 1.30.0.
add 5e268c72a4 gnu: r-cicero: Update to 1.20.0.
add 8ef81e22b3 gnu: r-circrnaprofiler: Update to 1.16.0.
add 5fa4d39b7a gnu: r-genie3: Update to 1.24.0.
add ef52ea9c6d gnu: r-roc: Update to 1.78.0.
add b90a54605a gnu: r-watermelon: Update to 2.8.0.
add 86bc7de016 gnu: r-gdsfmt: Update to 1.38.0.
add a36fba9d1b gnu: r-bigmelon: Update to 1.28.0.
add b22318e0af gnu: r-seqbias: Update to 1.50.0.
add fb6da71504 gnu: r-reqon: Update to 1.48.0.
add 43ea1c324a gnu: r-wavcluster: Update to 2.36.0.
add 3c93fab37f gnu: r-tilingarray: Update to 1.80.0.
add 75cac71be2 gnu: r-variantfiltering: Update to 1.38.0.
add 3df0e523f2 gnu: r-variancepartition: Update to 1.32.1.
add 3ff2e070fe gnu: r-htqpcr: Update to 1.56.0.
add 428f4cb50b gnu: r-ucell: Update to 2.6.1.
add 642f470df1 gnu: r-unifiedwmwqpcr: Update to 1.38.0.
add 45cbc2372e gnu: r-universalmotif: Update to 1.20.0.
add 865e3e75a8 gnu: r-ace: Update to 1.20.0.
add 85060391ba gnu: r-acgh: Update to 1.80.0.
add 84de1e4ade gnu: r-acme: Update to 2.58.0.
add 2fa21de9c2 gnu: r-acde: Update to 1.32.0.
add bab03df210 gnu: r-bgx: Update to 1.68.0.
add 6f38f25816 gnu: r-bhc: Update to 1.54.0.
add a70ca6a613 gnu: r-bicare: Update to 1.60.0.
add 99ff99c9eb gnu: r-bifet: Update to 1.22.0.
add 772c6fb840 gnu: r-rsbml: Update to 2.60.0.
add 0fc5a510b5 gnu: r-hybridmtest: Update to 1.46.0.
add 59e55fc39e gnu: r-hypergraph: Update to 1.74.0.
add 0f8cccb01f gnu: r-hyperdraw: Update to 1.54.0.
add df794c84f9 gnu: r-biggr: Update to 1.38.0.
add 8d14b99d75 gnu: r-chemmineob: Update to 1.40.0.
add dadf10ed8b gnu: r-chemminer: Update to 3.54.0.
add be0482d40f gnu: r-fmcsr: Update to 1.44.0.
add c0beba2647 gnu: r-bioassayr: Update to 1.40.0.
add 026bc372d8 gnu: r-biobroom: Update to 1.34.0.
add 26e71b7a72 gnu: r-graphite: Update to 1.48.0.
add 72ad29f730 gnu: r-reactomepa: Update to 1.46.0.
add 92a1f44f6d gnu: r-ebarrays: Update to 2.66.0.
add e477608856 gnu: r-biocbaseutils: Update to 1.4.0.
add ee1f2a995f gnu: r-bioccheck: Update to 1.38.0.
add cb0e6b7711 gnu: r-biocgraph: Update to 1.64.0.
add f9dcaf2f11 gnu: r-biocstyle: Update to 2.30.0.
add 7943457076 gnu: r-biocviews: Update to 1.70.0.
add 2b79447123 gnu: r-experimenthub: Update to 2.10.0.
add 15961e132d gnu: r-grohmm: Update to 1.36.0.
add 18b06daa50 gnu: r-multiassayexperiment: Update to 1.28.0.
add 10cc2092a0 gnu: r-bioconcotk: Update to 1.22.0.
add b972c4f697 gnu: r-biocor: Update to 1.26.0.
add 5890114ab6 gnu: r-biocpkgtools: Update to 1.20.0.
add c4f3bc06f5 gnu: r-biocset: Update to 1.16.0.
add 78a082720a gnu: r-biocworkflowtools: Update to 1.28.0.
add 251e2665cf gnu: r-biodist: Update to 1.74.0.
add 75e6f86cc0 gnu: r-pcatools: Update to 2.14.0.
add b26b8e521b gnu: r-m3c: Update to 1.24.0.
add 2810ee4b0d gnu: r-icens: Update to 1.74.0.
add dbc5c312ae gnu: r-preprocesscore: Update to 1.64.0.
add 43972af221 gnu: r-s4arrays: Update to 1.2.0.
add 7d25e2b5c3 gnu: r-s4vectors: Update to 0.40.1.
add c4aeeb8e37 gnu: r-rgraphviz: Update to 2.46.0.
add d2819bd479 gnu: r-fishpond: Update to 2.8.0.
add ac96b72ebf gnu: r-fithic: Update to 1.28.0.
add 9940cd5a87 gnu: r-hitc: Update to 1.46.0.
add a9a7f0e6d5 gnu: r-hdf5array: Update to 1.30.0.
add d7ceedddff gnu: r-rhdf5lib: Update to 1.24.0.
add 0223873ff9 gnu: r-beachmat: Update to 2.18.0.
add 87a27ee369 gnu: r-beadarray: Update to 2.52.0.
add 74479eb3af gnu: r-beadarraysnp: Update to 1.68.0.
add d8aa22981d gnu: r-beaddatapackr: Update to 1.54.0.
add 3e271e4d71 gnu: r-cner: Update to 1.38.0.
add eff0371eed gnu: r-tfbstools: Update to 1.40.0.
add 2458396f31 gnu: r-maftools: Update to 2.18.0.
add c5068f9911 gnu: r-motifmatchr: Update to 1.24.0.
add f936bf66fc gnu: r-chromvar: Update to 1.24.0.
add 1e98a630ec gnu: r-singlecellexperiment: Update to 1.24.0.
add 71c77b8a95 gnu: r-singler: Update to 2.4.0.
add 9cd2ed0580 gnu: r-scuttle: Update to 1.12.0.
add 051831dedc gnu: r-scater: Update to 1.30.0.
add d797b2bb6f gnu: r-scran: Update to 1.30.0.
add fb51c8df4f gnu: r-sparsematrixstats: Update to 1.14.0.
add 372d1079d4 gnu: r-spatialexperiment: Update to 1.12.0.
add 8fbc9cecda gnu: r-delayedmatrixstats: Update to 1.24.0.
add 0708efd724 gnu: r-mscoreutils: Update to 1.14.0.
add 456beea62b gnu: r-msfeatures: Update to 1.10.0.
add f2ab2bba68 gnu: r-biocio: Update to 1.12.0.
add bf8406c30a gnu: r-msmseda: Update to 1.40.0.
add fd9c0e4167 gnu: r-msmstests: Update to 1.40.0.
add bfd81d4846 gnu: r-catalyst: Update to 1.26.0.
add 7af02a2c1d gnu: r-erma: Update to 1.18.0.
add f52a6fe0f1 gnu: r-ggbio: Update to 1.50.0.
add 3e5e4bf311 gnu: r-gviz: Update to 1.46.0.
add 11300bd9ee gnu: r-gwascat: Update to 2.34.0.
add b6288f949f gnu: r-gwastools: Update to 1.48.0.
add 9f139605ef gnu: r-kegggraph: Update to 1.62.0.
add e9618ab210 gnu: r-ldblock: Update to 1.32.0.
add 740e7ff51b gnu: r-parody: Update to 1.60.0.
add 6b8c604e48 gnu: r-pathview: Update to 1.42.0.
add bbe5704c17 gnu: r-snapcgh: Update to 1.72.0.
add 3b0e948493 gnu: r-snprelate: Update to 1.36.0.
add d775b141cf gnu: r-snpstats: Update to 1.52.0.
add 0c881be497 gnu: r-chromstar: Update to 1.28.0.
add 7e36e3ed55 gnu: r-guitar: Update to 2.18.0.
add 9d0492c750 gnu: r-ballgown: Update to 2.34.0.
add 6ddf9ed610 gnu: r-megadepth: Update to 1.12.0.
add 58661d1d54 gnu: r-beclear: Update to 2.18.0.
add 38f88c84bf gnu: r-bgeecall: Update to 1.18.1.
add d40b4c5063 gnu: r-bgeedb: Update to 2.28.0.
add ae127ddf0d gnu: r-biobtreer: Update to 1.14.0.
add 31fef7c331 gnu: r-minet: Update to 3.60.0.
add d5026a9e16 gnu: r-genetclassifier: Update to 1.42.0.
add b2389dcfc1 gnu: r-dir-expiry: Update to 1.10.0.
add b5527cc3c6 gnu: r-basilisk-utils: Update to 1.14.0.
add 327c9bd7c8 gnu: r-basilisk: Update to 1.14.0.
add 9480ea5046 gnu: r-biocthis: Update to 1.12.0.
add 2b4dcd4a7b gnu: r-biodb: Update to 1.10.0.
add c91a1a8bc8 gnu: r-biomformat: Update to 1.30.0.
add b4e803a8a9 gnu: r-mvcclass: Update to 1.76.0.
add 4ccceb31b9 gnu: r-biomvcclass: Update to 1.70.0.
add 63f3a845ea gnu: r-bionero: Update to 1.10.0.
add b0190a7d5c gnu: r-bionet: Update to 1.62.0.
add ee259a9ad9 gnu: r-bionetstat: Update to 1.22.0.
add a7d1b8832a gnu: r-bioqc: Update to 1.30.0.
add 9f2c8b711b gnu: r-biotip: Update to 1.16.0.
add 69d7d7a6db gnu: r-biotmle: Update to 1.26.0.
add 407e9b2710 gnu: r-bsseq: Update to 1.38.0.
add f6e56299e7 gnu: r-dada2: Update to 1.30.0.
add 73efb254d8 gnu: r-dmrseq: Update to 1.22.0.
add 41a4f01473 gnu: r-omicade4: Update to 1.42.0.
add 53ebbff56c gnu: r-omnipathr: Update to 3.10.1.
add 28480926a5 gnu: r-biscuiteer: Update to 1.16.0.
add 9ee38f4ee6 gnu: r-tcgabiolinks: Update to 2.30.0.
add 270d7e1079 gnu: r-tricycle: Update to 1.10.0.
add 1c3e8ab395 gnu: r-tximeta: Update to 1.20.0.
add c82c9c8090 gnu: r-phyloseq: Update to 1.46.0.
add a938342899 gnu: r-rhdf5lib: Adjust modifications to Makevars.
add c66c66ee3f gnu: r-hpo-db: Include HPO sqlite database.
add b30127052e gnu: r-readwriter: Update to 0.3.2-1.12d32cb.
add abaca151b2 gnu: r-mpo-db: Include HPO sqlite database.
add 0150529188 gnu: Remove r-wavetiling.
add 142313cf0c gnu: Remove r-genomegraphs.
add 78641cf9da gnu: r-spams: Build with C++11.
add 38b5777ec8 gnu: r-rhdf5filters: Simplify.
add 8be2f44765 gnu: Remove r-sigpathway.
add eb93ab2d14 gnu: r-gdata: Remove Excel from description.
add ef473d3422 gnu: symengine: Update to 0.11.1.
add a55c3110be gnu: python-opentsne: Update to 1.0.0.
add 9642b1c7af gnu: python-openturns: Update to 1.21.1.
add a7d56852e3 gnu: Add python-salib.
add 96e8502faa gnu: Add python-emcee.
add 1879bfd88f gnu: python-deepxde: Update to 1.10.0.
add 43d9fa0802 gnu: python-pytensor: Update to 2.17.3.
add 479fdc8451 gnu: python-pymc: Update to 5.9.1.
add 10d728139d gnu: Add r-ggbreak.
add 625cfb4c4c gnu: password-store: Add missing ‘tail’ input.
add f54f36b363 gnu: passff-host: Add explicit references to inputs and
remove some.
new 72e886328c Merge branch 'master' into gnome-team
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
doc/contributing.texi | 2 +-
doc/guix-cookbook.texi | 53 +-
doc/guix.texi | 255 +-
etc/teams.scm | 11 +
gnu/bootloader.scm | 5 +-
gnu/home/services.scm | 5 +-
gnu/local.mk | 6 +-
gnu/packages/admin.scm | 24 +-
gnu/packages/algebra.scm | 4 +-
gnu/packages/astronomy.scm | 205 +
gnu/packages/bioconductor.scm | 2828 +-
gnu/packages/bioinformatics.scm | 121 +-
gnu/packages/bittorrent.scm | 11 +-
gnu/packages/browser-extensions.scm | 71 +
gnu/packages/ci.scm | 8 +-
gnu/packages/cmake.scm | 1 +
gnu/packages/cpp.scm | 17 +
gnu/packages/cran.scm | 785 +-
gnu/packages/crates-gtk.scm | 251 +
gnu/packages/crates-io.scm | 1466 +-
gnu/packages/cups.scm | 14 +-
gnu/packages/curl.scm | 4 +-
gnu/packages/databases.scm | 95 +-
gnu/packages/dezyne.scm | 4 +-
gnu/packages/diffoscope.scm | 4 +-
gnu/packages/emacs-xyz.scm | 321 +-
gnu/packages/emulators.scm | 52 +-
gnu/packages/firmware.scm | 23 +-
gnu/packages/game-development.scm | 4 +-
gnu/packages/games.scm | 235 +-
gnu/packages/gcc.scm | 19 +-
gnu/packages/gnuzilla.scm | 12 +-
gnu/packages/golang.scm | 4 +-
gnu/packages/guile-xyz.scm | 63 +-
gnu/packages/ipfs.scm | 11 +-
gnu/packages/java.scm | 4 +-
gnu/packages/jupyter.scm | 48 +
gnu/packages/linux.scm | 34 +-
gnu/packages/lisp-xyz.scm | 83 +-
gnu/packages/lisp.scm | 4 +-
gnu/packages/llvm.scm | 42 +-
gnu/packages/machine-learning.scm | 80 +-
gnu/packages/mail.scm | 17 +-
gnu/packages/markup.scm | 19 +-
gnu/packages/maths.scm | 95 +-
gnu/packages/mpd.scm | 4 +-
gnu/packages/music.scm | 15 +-
gnu/packages/parallel.scm | 4 +-
gnu/packages/password-utils.scm | 5 +-
gnu/packages/patches/hplip-usb-timeout.patch | 24 +
gnu/packages/patches/online-judge-tools.patch | 62 +
.../python-online-judge-api-client-tests.patch | 429 +
.../patches/python-pycrypto-CVE-2013-7459.patch | 97 -
.../patches/python-pycrypto-time-clock.patch | 23 -
gnu/packages/pdf.scm | 10 +-
gnu/packages/python-check.scm | 20 +-
gnu/packages/python-science.scm | 31 +-
gnu/packages/python-xyz.scm | 224 +-
gnu/packages/radio.scm | 4 +-
gnu/packages/rust-apps.scm | 58 +-
gnu/packages/sdl.scm | 27 +
gnu/packages/sphinx.scm | 46 +-
gnu/packages/statistics.scm | 105 +-
gnu/packages/syncthing.scm | 4 +-
gnu/packages/telephony.scm | 6 +-
gnu/packages/terminals.scm | 42 +-
gnu/packages/tls.scm | 15 +-
gnu/packages/tor.scm | 4 +-
gnu/packages/upnp.scm | 56 +
gnu/packages/video.scm | 75 +
gnu/packages/vim.scm | 4 +-
gnu/packages/web-browsers.scm | 4 +-
gnu/packages/web.scm | 35 +-
gnu/packages/wine.scm | 5 +-
gnu/packages/wm.scm | 9 +-
gnu/services/admin.scm | 24 +-
gnu/system/file-systems.scm | 2 +-
gnu/system/vm.scm | 6 +
guix/build-system/go.scm | 11 +-
guix/build-system/r.scm | 2 +-
guix/channels.scm | 3 +-
guix/grafts.scm | 43 +-
guix/import/cran.scm | 4 +-
guix/packages.scm | 7 +-
guix/profiles.scm | 49 +-
guix/scripts/environment.scm | 35 +-
guix/utils.scm | 7 +
po/doc/guix-cookbook.de.po | 6321 ++--
po/doc/guix-cookbook.fr.po | 3246 +-
po/doc/guix-manual.de.po | 30903 +++++++++---------
po/doc/guix-manual.fr.po | 30786 +++++++++---------
po/doc/guix-manual.zh_CN.po | 31747 ++++++++++---------
po/guix/es.po | 11 +-
po/guix/it.po | 13 +-
po/guix/zh_CN.po | 82 +-
po/packages/zh_CN.po | 15 +-
tests/grafts.scm | 50 +-
tests/guix-environment-container.sh | 2 +-
tests/guix-pack.sh | 4 +-
tests/profiles.scm | 24 +-
tests/transformations.scm | 5 +
101 files changed, 61187 insertions(+), 51082 deletions(-)
create mode 100644 gnu/packages/patches/hplip-usb-timeout.patch
create mode 100644 gnu/packages/patches/online-judge-tools.patch
create mode 100644
gnu/packages/patches/python-online-judge-api-client-tests.patch
delete mode 100644 gnu/packages/patches/python-pycrypto-CVE-2013-7459.patch
delete mode 100644 gnu/packages/patches/python-pycrypto-time-clock.patch
- branch gnome-team updated (1c41971e72 -> 72e886328c),
guix-commits <=