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02/02: gnu: Add r-ewastools.
From: |
guix-commits |
Subject: |
02/02: gnu: Add r-ewastools. |
Date: |
Sat, 4 Nov 2023 12:05:38 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 4c17016019a1fdb2e49b944a594361d046bd1f00
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Fri Nov 3 15:55:57 2023 +0100
gnu: Add r-ewastools.
* gnu/packages/bioinformatics.scm (r-ewastools): New variable.
Change-Id: I4117dbee188c7d9547fe63b2b89ec9258bbda60b
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
---
gnu/packages/bioinformatics.scm | 32 ++++++++++++++++++++++++++++++++
1 file changed, 32 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index bac2e6fc7b..7feea35d74 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -876,6 +876,38 @@ attributes of microbiome data - zero-inflation and
over-dispersion, are
simultaneously considered.")
(license license:gpl3))))
+(define-public r-ewastools
+ (let ((commit "f7646cacd73266708479b3fea5d625054d179f95")
+ (revision "1"))
+ (package
+ (name "r-ewastools")
+ (version (git-version "1.7.2" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/hhhh5/ewastools/")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0irarlnxfnasa755adxsn67rxsy01zwhjhw18g4cag08cqiyyw41"))))
+ (properties `((upstream-name . "ewastools")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-data-table
+ r-igraph
+ r-illuminaio
+ r-mblm
+ r-quadprog))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/hhhh5/ewastools/")
+ (synopsis
+ "Quality control toolset for the Illumina Infinium DNA methylation")
+ (description
+ "This package provides a collection of useful functions for working
+with DNA methylation micro-array data.")
+ (license license:unlicense))))
+
(define-public r-numbat
(let ((commit "4ab7752e7d267a3f443756675728521a9b0a7295")
(revision "1"))