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branch master updated: gnu: Add r-illuminahumanmethylationepicmanifest.
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guix-commits |
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branch master updated: gnu: Add r-illuminahumanmethylationepicmanifest. |
Date: |
Mon, 13 Nov 2023 08:47:51 -0500 |
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rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new 951a1433f3 gnu: Add r-illuminahumanmethylationepicmanifest.
951a1433f3 is described below
commit 951a1433f38a7cffa4cbcb4065c27494c300f2fa
Author: nafkhamdc <navid.afkhami@mdc-berlin.de>
AuthorDate: Mon Nov 13 12:34:43 2023 +0000
gnu: Add r-illuminahumanmethylationepicmanifest.
* gnu/packages/bioinformatics.scm (r-illuminahumanmethylationepicmanifest):
New variable.
Change-Id: I9635033ed5e7e44ecfaff76cd002379582900686
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
---
gnu/packages/bioinformatics.scm | 35 +++++++++++++++++++++++++++++++++++
1 file changed, 35 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7feea35d74..a414a58382 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -15657,6 +15657,41 @@ analysing cytometry data in R.")
spatial single-cell expression data.")
(license license:expat))))
+;; Variant of r-illuminahumanmethylationepicmanifest in the
+;; (gnu packages bioconductor) module.
+(define-public r-illuminahumanmethylationepicmanifest-latest
+ (let ((commit "a9ffbad36f5e496ece6c4c37b80e2f4f7e02d0c3")
+ (revision "1"))
+ (package
+ (name "r-illuminahumanmethylationepicmanifest")
+ (version (git-version "1.0.0" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url
+
"https://github.com/achilleasNP/IlluminaHumanMethylationEPICmanifest")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0v8f0hl0v8gwi61vgqw56rn5j09h95hj54rb8pzbn0znm162n4fc"))))
+ (properties `((upstream-name . "IlluminaHumanMethylationEPICmanifest")))
+ (build-system r-build-system)
+ (home-page
+ "https://github.com/achilleasNP/IlluminaHumanMethylationEPICmanifest")
+ (synopsis "Illumina Human Methylation Manifest 1.0 B5 for R and minfi")
+ (description
+ "This is a drop-in replacement for the
+@code{IlluminaHumanMethylationEPIC} package. It utilizes a Manifest based on
+1.0B5 annotation. As of version 0.3.0, the
+@code{IlluminaHumanMethylationEPIC} package still employs the 1.0B2 annotation
+manifest. A corresponding annotation package,
+@code{IlluminaHumanMethylationEPICanno.ilm10b5.hg38}, is available to ensure
+proper annotation. The decision to maintain the same name is due to
+complications in downstream processing caused by array name lookup in certain
+preprocessing options.")
+ (license license:artistic2.0))))
+
(define-public r-illuminahumanmethylationepicanno-ilm10b5-hg38
(let ((commit "3db06910e27f626e0cc8b335ff45cf9a4050a36a")
(revision "1"))
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