branch master updated (259930c8eb -> 93597fc39c)

[guix-commits]

rekado pushed a change to branch master
in repository guix.

    from 259930c8eb gnu: Add alsa-scarlett-gui.
     new d6239e12d4 gnu: r-rjava: Update to 1.0-10.
     new 929079dfbc gnu: r-pbdmpi: Update to 0.5-1.
     new af28dc137f gnu: r-scales: Update to 1.3.0.
     new 4d272fa3a9 gnu: r-spacyr: Update to 1.3.0.
     new 51702785da gnu: r-openmx: Update to 2.21.11.
     new 5ad3b5d786 gnu: r-spacetime: Update to 1.3-1.
     new 1da863cc3b gnu: r-wgcna: Update to 1.72-5.
     new 39b8404168 gnu: r-pkgbuild: Update to 1.4.3.
     new b3fd9eeb81 gnu: r-bslib: Update to 0.6.1.
     new 5374d0d89b gnu: Add js-datatables-1.9.
     new b55d0a4abf gnu: r-crosstalk: Update to 1.2.1.
     new 8881398803 gnu: r-bookdown: Update to 0.37.
     new 2efa72be46 gnu: r-interactivedisplay: Add missing JavaScript sources.
     new 837c91501e gnu: r-dt: Update to 0.31.
     new 8f72116222 gnu: r-interactivedisplay: Add missing input.
     new 517fedb360 gnu: apache-arrow: Update to 14.0.0.
     new 633db77deb gnu: r-arrow: Update to 14.0.0.2.
     new c544f5ce82 gnu: r-biomartr: Update to 1.0.7.
     new b6c482e860 gnu: r-fhtest: Update to 1.5.1.
     new 1354314cdf gnu: r-abn: Update to 3.0.4.
     new 75e93cd0f5 gnu: r-brio: Update to 1.1.4.
     new c4dbd4b4f4 gnu: r-collapse: Update to 2.0.7.
     new 8e710b7d9d gnu: r-dbscan: Update to 1.1-12.
     new ca07e6e9e3 gnu: r-ggdist: Update to 3.3.1.
     new 59e89bf8e6 gnu: r-v8: Update to 4.4.1.
     new 60cf193569 gnu: r-zcompositions: Update to 1.5.
     new 4f1c47ff64 gnu: r-ggpmisc: Update to 0.5.5.
     new bc10196ab2 gnu: r-ggside: Update to 0.2.3.
     new dd16b4ac2b gnu: r-philentropy: Update to 0.8.0.
     new 96ce996cd4 gnu: r-mboost: Update to 2.9-9.
     new 80c81c5b94 gnu: r-tgp: Update to 2.4-22.
     new 4ff509356a gnu: r-tgstat: Update to 2.3.25.
     new 9cf5f6fc41 gnu: r-morpho: Update to 2.12.
     new 882d1e7d8c gnu: r-httpuv: Update to 1.6.13.
     new a02c770be4 gnu: r-jsonlite: Update to 1.8.8.
     new 1f70eaa334 gnu: r-htmlwidgets: Update to 1.6.4.
     new 058e3a34f8 gnu: r-curl: Update to 5.2.0.
     new 80f2178bf1 gnu: r-rstpm2: Update to 1.6.3.
     new 9e04bd09d3 gnu: r-jqr: Update to 1.3.3.
     new fa0659e7fc gnu: r-sass: Update to 0.4.8.
     new 35d58172f5 gnu: r-ggmap: Update to 4.0.0.
     new 04023acf69 gnu: r-haven: Update to 2.5.4.
     new 4ff7edccc8 gnu: r-pls: Update to 2.8-3.
     new 5df0601f42 gnu: r-rcppspdlog: Update to 0.0.15.
     new 7312e1060d gnu: r-ctrdata: Update to 1.16.0.
     new 780c8c9349 gnu: r-progress: Update to 1.2.3.
     new 7714e8fd32 gnu: Add r-broom-helpers.
     new 7696d8869e gnu: Add r-ggstats.
     new 7c62e715bc gnu: r-ggally: Update to 2.2.0.
     new 757f9282df gnu: r-sp: Update to 2.1-2.
     new 0687da38c1 gnu: r-lambertw: Update to 0.6.9-1.
     new b291adc192 gnu: r-lamw: Update to 2.2.3.
     new 8d634d9426 gnu: r-rmumps: Update to 5.2.1-26.
     new 7a613a7139 gnu: r-bbmle: Update to 1.0.25.1.
     new 26c3478a2b gnu: r-lpsolve: Update to 5.6.20.
     new aff3336f44 gnu: r-rmysql: Update to 0.10.27.
     new a3a4142bc3 gnu: r-stringdist: Update to 0.9.12.
     new f57f333c82 gnu: r-ordinal: Update to 2023.12-4.
     new dae2e341f9 gnu: r-vcfr: Update to 1.15.0.
     new 5eff6b4a6e gnu: r-rvcg: Update to 0.22.2.
     new 5d22b61238 gnu: r-cli: Update to 3.6.2.
     new c97374311b gnu: r-processx: Update to 3.8.3.
     new 4838ea3302 gnu: r-seriation: Update to 1.5.3.
     new 3ef62e0af8 gnu: r-vctrs: Update to 0.6.5.
     new 68b9d4ac17 gnu: r-pinfsc50: Update to 1.3.0.
     new 39ae91758b gnu: r-tinytex: Update to 0.49.
     new 50aaf95338 gnu: r-nestedcv: Update to 0.7.3.
     new ac05612a85 gnu: r-network: Update to 1.18.2.
     new 9cc356fddb gnu: r-sna: Update to 2.7-2.
     new 9a7c16df9a gnu: r-ttr: Update to 0.24.4.
     new 5def37be6a gnu: r-splus2r: Update to 1.3-4.
     new a420b09fbb gnu: r-tseries: Update to 0.10-55.
     new ad1b00d5d3 gnu: r-extradistr: Update to 1.10.0.
     new d89ff9a240 gnu: r-expm: Update to 0.999-8.
     new e6825ebf0f gnu: r-phontools: Update to 0.2-2.2.
     new a576f5b8df gnu: r-baseline: Update to 1.3-5.
     new 2523373724 gnu: r-signal: Update to 1.8-0.
     new 2857cbd250 gnu: r-arules: Update to 1.7-7.
     new 945a2d3fc9 gnu: r-later: Update to 1.3.2.
     new 7d1af288b4 gnu: r-fstcore: Update to 0.9.18.
     new fc66372346 gnu: r-snowfall: Update to 1.84-6.3.
     new bed234ff0d gnu: r-fansi: Update to 1.0.6.
     new 47f8a320fb gnu: r-rjags: Update to 4-15.
     new 14f09c1782 gnu: r-overlap: Update to 0.3.4.1.
     new 0ca8d8bf78 gnu: r-insight: Update to 0.19.7.
     new 66f371594f gnu: r-cmplot: Update to 4.5.0.
     new 4fd871dd26 gnu: r-interp: Update to 1.1-5.
     new 5410297190 gnu: r-gam: Update to 1.22-3.
     new ca94f61878 gnu: r-nleqslv: Update to 3.3.5.
     new be7dd9cdef gnu: r-gee: Update to 4.13-26.
     new 3b7e441bdc gnu: r-tarchetypes: Update to 0.7.10.
     new 613e155cc2 gnu: r-quickjsr: Update to 1.0.8.
     new c41ec87ace gnu: r-acceptancesampling: Update to 1.0-10.
     new ac1cb93de6 gnu: r-tmb: Update to 1.9.9.
     new 0374da1c50 gnu: r-gert: Update to 2.0.1.
     new 1e9b81a468 gnu: r-clustercrit: Update to 1.3.0.
     new cc800e4030 gnu: r-rcppalgos: Update to 2.8.3.
     new 4d9803cad8 gnu: r-ncdf4: Update to 1.22.
     new f3886b71cc gnu: r-rgl: Update to 1.2.8.
     new 8a81f7c737 gnu: r-multicool: Update to 1.0.0.
     new 93e4dca8fd gnu: r-admisc: Update to 0.34.
     new e06c8a51ee gnu: r-sodium: Update to 1.3.1.
     new c9dcb314a4 gnu: r-tiff: Update to 0.1-12.
     new b86972aeb2 gnu: r-rnifti: Update to 1.5.1.
     new 12e19abec5 gnu: r-ore: Update to 1.7.4.1.
     new 95782bb8f8 gnu: r-gmp: Update to 0.7-3.
     new 845497e8f5 gnu: r-rmpfr: Update to 0.9-4.
     new 1c19245ebc gnu: r-dotcall64: Update to 1.1-1.
     new 98dd9d250d gnu: r-mcmc: Update to 0.9-8.
     new f30c5aef79 gnu: r-capushe: Update to 1.1.2.
     new b1ea092a47 gnu: r-sets: Update to 1.0-25.
     new 768a26a0ae gnu: r-seqinr: Update to 4.2-36.
     new cf1be78002 gnu: r-units: Update to 0.8-5.
     new f934375f95 gnu: r-deldir: Update to 2.0-2.
     new edea7e8ec5 gnu: r-wk: Update to 0.9.1.
     new 9181474ca5 gnu: r-s2: Update to 1.1.5.
     new 691490a429 gnu: r-spdep: Update to 1.3-1.
     new cd322357f5 gnu: r-tdthap: Update to 1.3.
     new 7481f0092d gnu: r-float: Update to 0.3-2.
     new 8d0ee7d7a4 gnu: r-dqrng: Update to 0.3.2.
     new acf1c199e9 gnu: r-ibreakdown: Update to 2.1.2.
     new d3566377dd gnu: r-xgboost: Update to 1.7.6.1.
     new 405311d3b6 gnu: r-leiden: Update to 0.4.3.1.
     new c68de2cdf5 gnu: r-assertr: Update to 3.0.1.
     new e975c2e8c8 gnu: r-desolve: Update to 1.40.
     new 1ede0709d2 gnu: r-pmcmrplus: Update to 1.9.10.
     new 613f9c7ec8 gnu: r-accrual: Update to 1.4.
     new c38e706b44 gnu: r-filelock: Update to 1.0.3.
     new 98157397cd gnu: r-tuner: Update to 1.4.6.
     new ca68c6eba3 gnu: r-isocodes: Update to 2023.12.07.
     new 9a8a137afe gnu: r-topicmodels: Update to 0.2-15.
     new e4fbd3455c gnu: r-stm: Update to 1.3.7.
     new b3054504f8 gnu: r-msm: Update to 1.7.1.
     new f5c025053b gnu: r-keyring: Update to 1.3.2.
     new c525635e65 gnu: r-rlecuyer: Update to 0.3-8.
     new e0520bd6b2 gnu: r-getpass: Update to 0.2-4.
     new 3996149315 gnu: r-lightgbm: Update to 4.2.0.
     new 91b73b16be gnu: r-memisc: Update to 0.99.31.7.
     new 6351c2bbc8 gnu: r-spatstat-random: Update to 3.2-2.
     new a8d88d9798 gnu: r-gaston: Update to 1.6.
     new d66831117d gnu: r-cpp11: Update to 0.4.7.
     new 53cebb43b8 gnu: r-clusterr: Update to 1.3.2.
     new e00b6fd7ff gnu: r-igraph: Update to 1.6.0.
     new 783586ef62 gnu: r-dicedesign: Update to 1.10.
     new 036ac0386f gnu: r-qtl: Update to 1.66.
     new f231e73d94 gnu: r-qtl2: Update to 0.34.
     new c2e05a7f96 gnu: r-seqminer: Update to 9.3.
     new ca46f973e9 gnu: r-seuratobject: Update to 5.0.1.
     new 294ac5e255 gnu: r-seurat: Update to 5.0.1.
     new 87235849f1 gnu: r-mlr3pipelines: Update to 0.5.0-2.
     new 9fc384b8d2 gnu: r-mlr3: Update to 0.17.0.
     new 6eae78c4ca gnu: r-mlr3learners: Update to 0.5.7.
     new 13c00f407f gnu: r-mlr3tuning: Update to 0.19.2.
     new de0dffb8ea gnu: r-rjsonio: Update to 1.3-1.9.
     new e5d24d17b9 gnu: r-vroom: Update to 1.6.5.
     new 906e5e8881 gnu: r-webutils: Update to 1.2.0.
     new 010805aa9c gnu: r-stringfish: Update to 0.16.0.
     new a9616ac45e gnu: r-qs: Update to 0.25.7.
     new ad5a9e20cc gnu: r-iotools: Update to 0.3-5.
     new be7f1dba84 gnu: r-cluster: Update to 2.1.6.
     new 84fb814d88 gnu: r-foreign: Update to 0.8-86.
     new fd4bb4a54d gnu: r-matrix: Update to 1.6-4.
     new 43a4104468 gnu: r-nlme: Update to 3.1-164.
     new 16418b676e gnu: r-rpart: Update to 4.1.23.
     new 0b9590d359 gnu: r-stringi: Update to 1.8.2.
     new 0fd9a9dc54 gnu: r-gdtools: Update to 0.3.5.
     new ad25078d14 gnu: r-svglite: Update to 2.1.3.
     new e63220843b gnu: r-markdown: Update to 1.12.
     new c8fdf422e4 gnu: r-testthat: Update to 3.2.1.
     new 6c50ce5775 gnu: r-dplyr: Update to 1.1.4.
     new ac224a303f gnu: r-data-table: Update to 1.14.10.
     new 10e649db3e gnu: r-xml2: Update to 1.3.6.
     new 77931b17ff gnu: r-checkmate: Update to 2.3.1.
     new 16801b7e14 gnu: r-desc: Update to 1.4.3.
     new 92489d0766 gnu: r-git2r: Update to 0.33.0.
     new 18ed7e0a00 gnu: r-rcpparmadillo: Update to 0.12.6.6.1.
     new 00594a76e1 gnu: r-rsqlite: Update to 2.3.4.
     new cdf28e5e11 gnu: r-xml: Update to 3.99-0.16.
     new a7e3473c9b gnu: r-segmented: Update to 2.0-0.
     new e1a846a257 gnu: r-rtsne: Update to 0.17.
     new d17289bad2 gnu: r-e1071: Update to 1.7-14.
     new e7c61edc2f gnu: r-r-utils: Update to 2.12.3.
     new 9592148434 gnu: r-mvtnorm: Update to 1.2-4.
     new b21ed00b81 gnu: r-gtools: Update to 3.9.5.
     new f2041fe211 gnu: r-ggthemes: Update to 5.0.0.
     new c5e8b34bde gnu: r-fastica: Update to 1.2-4.
     new f7da625a37 gnu: r-diptest: Update to 0.77-0.
     new 45e59dae8f gnu: r-mclust: Update to 6.0.1.
     new a5df4d20ee gnu: r-robustbase: Update to 0.99-1.
     new 01c7baaf43 gnu: r-pcapp: Update to 2.0-4.
     new 541d828f97 gnu: r-robust: Update to 0.7-3.
     new 040c86f2c8 gnu: r-tclust: Update to 1.5-5.
     new 53082f702d gnu: r-cairo: Update to 1.6-2.
     new 3e17f2ff9c gnu: r-bayesfactor: Update to 0.9.12-4.6.
     new 07acdb1552 gnu: r-desctools: Update to 0.99.52.
     new 0ec25720ab gnu: python-vaex-core: Add missing input.
     new 4d92caef51 gnu: r-liana: Add missing inputs.
     new 07f85bb057 gnu: r-stringendo: Update to 0.6.0.
     new b2aa1d7cd0 gnu: r-readwriter: Update to 1.5.3-1.91373c4.
     new 46b1e717cf gnu: python-ctxcore: Update to 0.2.0.
     new 93597fc39c gnu: pyscenic: Update to 0.11.2-1.5f170fd.

The 201 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.


Summary of changes:
 gnu/packages/bioconductor.scm   |  93 +++--
 gnu/packages/bioinformatics.scm | 156 +++----
 gnu/packages/cran.scm           | 892 ++++++++++++++++++++++------------------
 gnu/packages/databases.scm      |   4 +-
 gnu/packages/javascript.scm     |  17 +-
 gnu/packages/python-science.scm |   1 +
 gnu/packages/statistics.scm     | 598 +++++++++++----------------
 7 files changed, 879 insertions(+), 882 deletions(-)