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02/39: gnu: r-reportingtools: Update to 2.42.3.
From: |
guix-commits |
Subject: |
02/39: gnu: r-reportingtools: Update to 2.42.3. |
Date: |
Fri, 15 Dec 2023 11:48:42 -0500 (EST) |
rekado pushed a commit to branch r-updates
in repository guix.
commit c5f25353462c8bf574e20bd874b38ccea584ec7a
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Fri Dec 15 17:25:58 2023 +0100
gnu: r-reportingtools: Update to 2.42.3.
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.42.3.
[source]: Adjust snippet.
[arguments]: Use minify-build-system in 'process-javascript phase.
[native-inputs]: Remove r-knitr; add r-rmarkdown.
Change-Id: I1c00e1a1d8095f40da29b57b8e82de493fcff26e
---
gnu/packages/bioconductor.scm | 37 +++++++++++++++----------------------
1 file changed, 15 insertions(+), 22 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 79b94a9450..c60c51f34c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9837,18 +9837,16 @@ region sets and other genomic features.")
(define-public r-reportingtools
(package
(name "r-reportingtools")
- (version "2.39.0")
+ (version "2.42.3")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "ReportingTools" version))
(sha256
(base32
- "15h7vqdxfv7y0f82ff7a8brqnscs324x22izlkgjk2wqahnmr2l1"))
+ "109vmrdsjdjnfrlcdyadzbwz9a50hqaahf7dawwxkbbh4mmdih78"))
(snippet
- '(for-each delete-file
- (list "inst/doc/jslib/jquery-1.8.0.min.js"
- "inst/extdata/jslib/jquery-1.8.0.min.js")))))
+ '(delete-file "inst/extdata/jslib/jquery-1.8.0.min.js"))))
(properties
`((upstream-name . "ReportingTools")))
(build-system r-build-system)
@@ -9856,25 +9854,20 @@ region sets and other genomic features.")
(list
#:modules '((guix build utils)
(guix build r-build-system)
- (srfi srfi-1))
+ (guix build minify-build-system)
+ (ice-9 match))
+ #:imported-modules
+ `(,@%r-build-system-modules
+ (guix build minify-build-system))
#:phases
- '(modify-phases %standard-phases
+ '(modify-phases (@ (guix build r-build-system) %standard-phases)
(add-after 'unpack 'process-javascript
(lambda* (#:key inputs #:allow-other-keys)
- (call-with-values
- (lambda ()
- (unzip2
- `((,(assoc-ref inputs "_")
- "inst/doc/jslib/jquery-1.8.0.min.js"))))
- (lambda (sources targets)
- (for-each (lambda (source target)
- (format #true "Processing ~a --> ~a~%"
- source target)
- (invoke "esbuild" source "--minify"
- (string-append "--outfile=" target)))
- sources targets)))
- (copy-file "inst/doc/jslib/jquery-1.8.0.min.js"
- "inst/extdata/jslib/jquery-1.8.0.min.js"))))))
+ (for-each (match-lambda
+ ((source . target)
+ (minify source #:target target)))
+ `((,(assoc-ref inputs "_")
+ . "inst/extdata/jslib/jquery-1.8.0.min.js"))))))))
(propagated-inputs
(list r-annotate
r-annotationdbi
@@ -9896,7 +9889,7 @@ region sets and other genomic features.")
r-r-utils
r-xml))
(native-inputs
- (list esbuild r-knitr
+ (list esbuild r-rmarkdown
(origin
(method url-fetch)
(uri "https://code.jquery.com/jquery-1.8.0.js")
- branch r-updates created (now 92f179ab20), guix-commits, 2023/12/15
- 02/39: gnu: r-reportingtools: Update to 2.42.3.,
guix-commits <=
- 06/39: gnu: r-aseb: Update to 1.46.3., guix-commits, 2023/12/15
- 07/39: gnu: r-bandits: Update to 1.18.1., guix-commits, 2023/12/15
- 05/39: gnu: r-anvil: Update to 1.14.1., guix-commits, 2023/12/15
- 10/39: gnu: r-degreport: Update to 1.38.5., guix-commits, 2023/12/15
- 15/39: gnu: r-edger: Update to 4.0.3., guix-commits, 2023/12/15
- 21/39: gnu: r-trackviewer: Update to 1.38.1., guix-commits, 2023/12/15
- 26/39: gnu: r-genomicscores: Update to 2.14.2., guix-commits, 2023/12/15
- 01/39: gnu: r-affycoretools: Update to 1.74.0., guix-commits, 2023/12/15
- 03/39: gnu: r-rhdf5lib: Update to 1.24.1., guix-commits, 2023/12/15
- 04/39: gnu: r-agimicrorna: Update to 2.52.0., guix-commits, 2023/12/15