[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
07/109: gnu: Add rust-bio-1.
|
From: |
guix-commits |
|
Subject: |
07/109: gnu: Add rust-bio-1. |
|
Date: |
Wed, 27 Dec 2023 10:10:39 -0500 (EST) |
efraim pushed a commit to branch rust-team
in repository guix.
commit 7bc509d6d90c2d78f2ec21697283e7e6ce272d75
Author: Efraim Flashner <efraim@flashner.co.il>
AuthorDate: Wed Dec 27 09:05:52 2023 +0200
gnu: Add rust-bio-1.
* gnu/packages/crates-io.scm (rust-bio-1): New variable.
(rust-bio-0.32, rust-bio-0.33, rust-bio-0.39): Inherit from rust-bio-1.
Change-Id: I72ca75a0b50837a73089f6ec8f5ad7ff779874f6
---
gnu/packages/crates-io.scm | 91 ++++++++++++++++++++++++++++++++--------------
1 file changed, 64 insertions(+), 27 deletions(-)
diff --git a/gnu/packages/crates-io.scm b/gnu/packages/crates-io.scm
index d8eaf79c0e..736a9be7e4 100644
--- a/gnu/packages/crates-io.scm
+++ b/gnu/packages/crates-io.scm
@@ -8184,8 +8184,67 @@ rust-bio and rust-htslib.")
("rust-strum-macros" ,rust-strum-macros-0.21)
("rust-thiserror" ,rust-thiserror-1))))))
+(define-public rust-bio-1
+ (package
+ (name "rust-bio")
+ (version "1.5.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (crate-uri "bio" version))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32 "1xdx5iih68lraiy6f8n200bgrdfl307dmgdmb984ynmzpb2wzp15"))))
+ (build-system cargo-build-system)
+ (arguments
+ `(#:cargo-inputs (("rust-anyhow" ,rust-anyhow-1)
+ ("rust-approx" ,rust-approx-0.5)
+ ("rust-bio-types" ,rust-bio-types-1)
+ ("rust-bit-set" ,rust-bit-set-0.5)
+ ("rust-bv" ,rust-bv-0.11)
+ ("rust-bytecount" ,rust-bytecount-0.6)
+ ("rust-csv" ,rust-csv-1)
+ ("rust-custom-derive" ,rust-custom-derive-0.1)
+ ("rust-editdistancek" ,rust-editdistancek-1)
+ ("rust-enum-map" ,rust-enum-map-0.6)
+ ("rust-fxhash" ,rust-fxhash-0.2)
+ ("rust-getset" ,rust-getset-0.1)
+ ("rust-itertools" ,rust-itertools-0.11)
+ ("rust-itertools-num" ,rust-itertools-num-0.1)
+ ("rust-lazy-static" ,rust-lazy-static-1)
+ ("rust-multimap" ,rust-multimap-0.8)
+ ("rust-ndarray" ,rust-ndarray-0.15)
+ ("rust-newtype-derive" ,rust-newtype-derive-0.1)
+ ("rust-num-integer" ,rust-num-integer-0.1)
+ ("rust-num-traits" ,rust-num-traits-0.2)
+ ("rust-ordered-float" ,rust-ordered-float-3)
+ ("rust-pest" ,rust-pest-2)
+ ("rust-pest-derive" ,rust-pest-derive-2)
+ ("rust-petgraph" ,rust-petgraph-0.6)
+ ("rust-rand" ,rust-rand-0.8)
+ ("rust-regex" ,rust-regex-1)
+ ("rust-serde" ,rust-serde-1)
+ ("rust-serde-derive" ,rust-serde-derive-1)
+ ("rust-statrs" ,rust-statrs-0.15)
+ ("rust-strum" ,rust-strum-0.24)
+ ("rust-strum-macros" ,rust-strum-macros-0.24)
+ ("rust-thiserror" ,rust-thiserror-1)
+ ("rust-triple-accel" ,rust-triple-accel-0.4)
+ ("rust-vec-map" ,rust-vec-map-0.8))
+ #:cargo-development-inputs (("rust-proptest" ,rust-proptest-1)
+ ("rust-rand" ,rust-rand-0.8)
+ ("rust-tempfile" ,rust-tempfile-3))))
+ (home-page "https://rust-bio.github.io";)
+ (synopsis "Bioinformatics library for Rust")
+ (description
+ "This package provides a bioinformatics library for Rust. This library
+provides implementations of many algorithms and data structures that are
+useful for bioinformatics, but also in other fields.")
+ (license license:expat)))
+
(define-public rust-bio-0.32
(package
+ (inherit rust-bio-1)
(name "rust-bio")
(version "0.32.0")
(source
@@ -8195,7 +8254,6 @@ rust-bio and rust-htslib.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32 "1wj6s3hzpx5xhajcnvdabbgpalgghdni7gmlhjl6i9pfh1xiq5pi"))))
- (build-system cargo-build-system)
(arguments
`(#:cargo-inputs
(("rust-approx" ,rust-approx-0.3)
@@ -8230,17 +8288,11 @@ rust-bio and rust-htslib.")
("rust-triple-accel" ,rust-triple-accel-0.3)
("rust-vec-map" ,rust-vec-map-0.8))
#:cargo-development-inputs
- (("rust-proptest" ,rust-proptest-0.10))))
- (home-page "https://rust-bio.github.io";)
- (synopsis "Bioinformatics library for Rust")
- (description
- "This package provides a bioinformatics library for Rust. This library
-provides implementations of many algorithms and data structures that are
-useful for bioinformatics, but also in other fields.")
- (license license:expat)))
+ (("rust-proptest" ,rust-proptest-0.10))))))
(define-public rust-bio-0.33
(package
+ (inherit rust-bio-1)
(name "rust-bio")
(version "0.33.0")
(source
@@ -8250,7 +8302,6 @@ useful for bioinformatics, but also in other fields.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32 "1zaghvazh243x2pg866hjx1zwwpp9qzwkf45iz2fs9af5y661gz5"))))
- (build-system cargo-build-system)
(arguments
`(#:cargo-inputs
(("rust-anyhow" ,rust-anyhow-1)
@@ -8288,17 +8339,11 @@ useful for bioinformatics, but also in other fields.")
("rust-vec-map" ,rust-vec-map-0.8))
#:cargo-development-inputs
(("rust-proptest" ,rust-proptest-0.10)
- ("rust-tempfile" ,rust-tempfile-3))))
- (home-page "https://rust-bio.github.io";)
- (synopsis "Bioinformatics library for Rust")
- (description
- "This package provides a bioinformatics library for Rust. This library
-provides implementations of many algorithms and data structures that are
-useful for bioinformatics, but also in other fields.")
- (license license:expat)))
+ ("rust-tempfile" ,rust-tempfile-3))))))
(define-public rust-bio-0.39
(package
+ (inherit rust-bio-1)
(name "rust-bio")
(version "0.39.2")
(source (origin
@@ -8308,7 +8353,6 @@ useful for bioinformatics, but also in other fields.")
(sha256
(base32
"00k0zv4yyiipzg2arnkrplfi0digwnv89bczfzhyva68yfv8scvb"))))
- (build-system cargo-build-system)
(arguments
`(#:cargo-inputs
(("rust-anyhow" ,rust-anyhow-1)
@@ -8343,14 +8387,7 @@ useful for bioinformatics, but also in other fields.")
("rust-strum-macros" ,rust-strum-macros-0.21)
("rust-thiserror" ,rust-thiserror-1)
("rust-triple-accel" ,rust-triple-accel-0.4)
- ("rust-vec-map" ,rust-vec-map-0.8))))
- (home-page "https://rust-bio.github.io";)
- (synopsis "Bioinformatics library for Rust")
- (description
- "This package provides a bioinformatics library for Rust. This library
-provides implementations of many algorithms and data structures that are
-useful for bioinformatics, but also in other fields.")
- (license license:expat)))
+ ("rust-vec-map" ,rust-vec-map-0.8))))))
(define-public rust-bio-0.41
(package
- branch rust-team updated (eee92c9ad9 -> 5844d18a89), guix-commits, 2023/12/27
- 01/109: gnu: rust-pyo3-0.18: Skip additional test., guix-commits, 2023/12/27
- 07/109: gnu: Add rust-bio-1.,
guix-commits <=
- 06/109: gnu: Add rust-bio-types-1., guix-commits, 2023/12/27
- 03/109: gnu: rust-generator-0.7: Update to 0.7.5., guix-commits, 2023/12/27
- 04/109: gnu: rust-curl-sys-0.4: Update to 0.4.70., guix-commits, 2023/12/27
- 05/109: gnu: newsboat: Update to 2.34., guix-commits, 2023/12/27
- 09/109: gnu: Add rust-levenshtein-1., guix-commits, 2023/12/27
- 24/109: gnu: Remove rust-napi-sys-0.4., guix-commits, 2023/12/27
- 28/109: gnu: Remove rust-memmap2-0.2., guix-commits, 2023/12/27
- 30/109: gnu: Remove rust-hmac-0.5., guix-commits, 2023/12/27
- 31/109: gnu: Remove rust-goblin-0.2., guix-commits, 2023/12/27
- 33/109: gnu: Remove rust-base64-0.6., guix-commits, 2023/12/27