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branch master updated: gnu: Add r-sleuth.
From: |
guix-commits |
Subject: |
branch master updated: gnu: Add r-sleuth. |
Date: |
Tue, 02 Jan 2024 15:51:00 -0500 |
This is an automated email from the git hooks/post-receive script.
rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new 8ed9ffedd4 gnu: Add r-sleuth.
8ed9ffedd4 is described below
commit 8ed9ffedd4b7a01fe1ecb73e75931d2ccfcd4923
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Tue Jan 2 21:49:13 2024 +0100
gnu: Add r-sleuth.
* gnu/packages/bioinformatics.scm (r-sleuth): New variable.
Change-Id: Ic358945548631fd3ac5de96b2efcf1fd93005898
---
gnu/packages/bioinformatics.scm | 37 +++++++++++++++++++++++++++++++++++++
1 file changed, 37 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index e03eb21531..bdad03b000 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10634,6 +10634,43 @@ analysis of cell types, subtypes, transcriptional
gradients,cell-cycle
variation, gene modules and their regulatory models and more.")
(license license:expat))))
+(define-public r-sleuth
+ (package
+ (name "r-sleuth")
+ (version "0.30.1")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/pachterlab/sleuth")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "09xgc7r6iisjkk0c0wn0q56zy0aph386kphwixfzq4422y7vlqci"))))
+ (properties `((upstream-name . "sleuth")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-aggregation
+ r-data-table
+ r-dplyr
+ r-ggplot2
+ r-lazyeval
+ r-matrixstats
+ r-pheatmap
+ r-reshape2
+ r-rhdf5
+ r-shiny
+ r-tidyr))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/pachterlab/sleuth")
+ (synopsis "Tools for investigating RNA-Seq")
+ (description
+ "Sleuth is a program for differential analysis of RNA-Seq data.
+It makes use of quantification uncertainty estimates obtained via Kallisto for
+accurate differential analysis of isoforms or genes, allows testing in the
+context of experiments with complex designs, and supports interactive
+exploratory data analysis via sleuth live.")
+ (license license:gpl3)))
+
(define-public r-snapatac
(package
(name "r-snapatac")
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