guix-commits
[Top][All Lists]
Advanced

[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

branch master updated: gnu: Add bustools.


From: guix-commits
Subject: branch master updated: gnu: Add bustools.
Date: Fri, 05 Jan 2024 12:21:29 -0500

This is an automated email from the git hooks/post-receive script.

rekado pushed a commit to branch master
in repository guix.

The following commit(s) were added to refs/heads/master by this push:
     new 9068dc9f29 gnu: Add bustools.
9068dc9f29 is described below

commit 9068dc9f29a81f8f061f66e1b1105361cea7242d
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Fri Jan 5 18:21:06 2024 +0100

    gnu: Add bustools.
    
    * gnu/packages/bioinformatics.scm (bustools): New variable.
    
    Change-Id: I24a936ad1d630663a41855a833e35fb9caa0155c
---
 gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a363298386..7dbebcf3da 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -575,6 +575,30 @@ BED, GFF/GTF, VCF.")
 whole-genome bisulfite sequencing (WGBS) reads from directional protocol.")
     (license license:asl2.0)))
 
+(define-public bustools
+  (package
+    (name "bustools")
+    (version "0.43.2")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/BUStools/bustools";)
+                    (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "068kjlc4d528269nl5mc3j8h2c95r1v545d3fi1iw1ckg8rba0hg"))))
+    (build-system cmake-build-system)
+    (arguments (list #:tests? #f))          ;no test target
+    (inputs (list zlib))
+    (home-page "https://bustools.github.io";)
+    (synopsis "Tools for working with BUS files")
+    (description "bustools is a program for manipulating BUS files for single
+cell RNA-Seq datasets.  It can be used to error correct barcodes, collapse
+UMIs, produce gene count or transcript compatibility count matrices, and is 
useful
+for many other tasks.")
+    (license license:bsd-2)))
+
 (define-public cellsnp-lite
   ;; Last release is from November 2021 and does not contain fixes.
   (let ((commit "0885d746b0b1ea65c8ef92f8943ca7669ca9734a")



reply via email to

[Prev in Thread] Current Thread [Next in Thread]