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07/47: gnu: python-scipy: Update to 1.11.4.
From: |
guix-commits |
Subject: |
07/47: gnu: python-scipy: Update to 1.11.4. |
Date: |
Wed, 10 Jan 2024 13:53:20 -0500 (EST) |
rekado pushed a commit to branch wip-python-science
in repository guix.
commit 6c760cdbb7e46eb8b8844761242bb4457146b524
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Sat Jan 6 11:32:56 2024 +0100
gnu: python-scipy: Update to 1.11.4.
* gnu/packages/python-science.scm (python-scipy): Update to 1.11.4.
[arguments]: Use mesonpy backend.
[inputs]: Replace pybind11 with pybind11-2.10.
[native-inputs]: Add python-click, python-doit, python-pooch, and
python-pydevtool; replace python-cython with python-cython-0.29.35.
Change-Id: I4b26e1b6382899bba24f84461f154e97765e08f5
---
gnu/packages/python-science.scm | 19 +++++++++----------
1 file changed, 9 insertions(+), 10 deletions(-)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 262d5b7b98..259d78b696 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2015, 2016, 2020, 2021, 2022, 2023 Ricardo Wurmus
<rekado@elephly.net>
+;;; Copyright © 2015, 2016, 2020, 2021, 2022, 2023, 2024 Ricardo Wurmus
<rekado@elephly.net>
;;; Copyright © 2015 Federico Beffa <beffa@fbengineering.ch>
;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com>
;;; Copyright © 2016 Hartmut Goebel <h.goebel@crazy-compilers.com>
@@ -84,21 +84,16 @@
(define-public python-scipy
(package
(name "python-scipy")
- (version "1.10.1")
+ (version "1.11.4")
(source
(origin
(method url-fetch)
(uri (pypi-uri "scipy" version))
(sha256
- (base32 "19gk88nvrxl050nasz25qpmmqvbdk247bkj09jx8jibv1awdzy9c"))))
+ (base32 "1amfxpnni0cagwjpb0i1kdgnh4sh484ryn4gfkgbjcspgy7bg8lh"))))
(build-system pyproject-build-system)
(arguments
(list
- ;; FIXME: The default 'mesonpy' build system doesn't seem to work with
- ;; our pyproject-build-system, errors with: AttributeError: 'list'
- ;; object has no attribute 'items' (see:
- ;; https://issues.guix.gnu.org/62781).
- #:build-backend "setuptools.build_meta"
#:phases
#~(modify-phases %standard-phases
(replace 'check
@@ -141,7 +136,7 @@
(format #t "sphinx-build not found, skipping~%"))))))))
(propagated-inputs
(list python-numpy python-matplotlib python-pyparsing python-pythran))
- (inputs (list openblas pybind11))
+ (inputs (list openblas pybind11-2.10))
(native-inputs
(list gfortran
;; XXX: Adding gfortran shadows GCC headers, causing a compilation
@@ -149,7 +144,11 @@
gcc
meson-python
pkg-config
- python-cython
+ python-click
+ python-cython-0.29.35
+ python-doit
+ python-pooch
+ python-pydevtool
python-pytest
python-pytest-xdist
python-threadpoolctl))
- 15/47: gnu: python-scikit-learn: Update to 1.3.2., (continued)
- 15/47: gnu: python-scikit-learn: Update to 1.3.2., guix-commits, 2024/01/10
- 35/47: gnu: python-pint: Update to 0.23., guix-commits, 2024/01/10
- 32/47: gnu: cnvkit: Update to 0.9.10., guix-commits, 2024/01/10
- 41/47: gnu: python-hicmatrix: Update to 17.1., guix-commits, 2024/01/10
- 37/47: gnu: python-cartopy: Update to 0.22.0., guix-commits, 2024/01/10
- 29/47: gnu: python-pyani: Disable tests., guix-commits, 2024/01/10
- 33/47: gnu: python-plastid: Update to 0.6.1., guix-commits, 2024/01/10
- 21/47: gnu: python-matplotlib: Update to 3.8.2., guix-commits, 2024/01/10
- 39/47: gnu: python-fit-nbinom: Disable tests., guix-commits, 2024/01/10
- 47/47: gnu: python-click-default-group: Update to 1.2.4., guix-commits, 2024/01/10
- 07/47: gnu: python-scipy: Update to 1.11.4.,
guix-commits <=
- 36/47: gnu: python-demuxem: Disable tests., guix-commits, 2024/01/10
- 27/47: gnu: python-captum: Update to 0.7.0., guix-commits, 2024/01/10
- 17/47: gnu: python-umap-learn: Update to 0.5.5., guix-commits, 2024/01/10
- 22/47: gnu: python-seaborn: Update to 0.13.1., guix-commits, 2024/01/10
- 42/47: gnu: python-hicexplorer: Make compatible with latest scipy., guix-commits, 2024/01/10
- 23/47: gnu: Add python-pytest-nunit., guix-commits, 2024/01/10
- 20/47: gnu: Add python-contourpy., guix-commits, 2024/01/10
- 26/47: gnu: python-poliastro: Make compatible with latest matplotlib., guix-commits, 2024/01/10
- 28/47: gnu: tadbit: Add missing input., guix-commits, 2024/01/10
- 43/47: gnu: python-pint: Add missing input., guix-commits, 2024/01/10