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55/59: gnu: python-bbknn: Update to 1.6.0.
From: |
guix-commits |
Subject: |
55/59: gnu: python-bbknn: Update to 1.6.0. |
Date: |
Tue, 16 Jan 2024 05:24:35 -0500 (EST) |
rekado pushed a commit to branch wip-python-science
in repository guix.
commit b5bc6c38dc8563361eb9962e450f88591c2fc925
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Fri Jan 12 08:52:54 2024 +0100
gnu: python-bbknn: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (python-bbknn): Update to 1.6.0.
[arguments]: Remove phase 'do-not-fail-to-find-sklearn.
[propagated-inputs]: Add python-pynndescent.
[native-inputs]: Add python-flit-core.
Change-Id: I5fca2d6ca52e54eb7650b3bb24a34a0aa47b1782
---
gnu/packages/bioinformatics.scm | 22 ++++++++++------------
1 file changed, 10 insertions(+), 12 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4eef211b86..09a4efeadf 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -16571,36 +16571,34 @@ million cells.")
(define-public python-bbknn
(package
(name "python-bbknn")
- (version "1.5.1")
+ (version "1.6.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "bbknn" version))
(sha256
(base32
- "0q11xdmjr2kf6f179a6kjizj3lllfrq743gslgw67qyzimvrrnhn"))))
- (build-system python-build-system)
+ "06q43cpi7wi6f2d2jqs8f9rbd94pg1hh7978gm92mi9gvzbaj08w"))))
+ (build-system pyproject-build-system)
(arguments
- `(#:tests? #f ; no tests are included
- #:phases
- (modify-phases %standard-phases
+ (list
+ #:tests? #f ;no tests are included
+ #:phases
+ '(modify-phases %standard-phases
;; Numba needs a writable dir to cache functions.
(add-before 'check 'set-numba-cache-dir
(lambda _
- (setenv "NUMBA_CACHE_DIR" "/tmp")))
- (add-after 'unpack 'do-not-fail-to-find-sklearn
- (lambda _
- ;; XXX: I have no idea why it cannot seem to find sklearn.
- (substitute* "setup.py"
- (("'sklearn'") "")))))))
+ (setenv "NUMBA_CACHE_DIR" "/tmp"))))))
(propagated-inputs
(list python-annoy
python-cython
python-numpy
python-pandas
+ python-pynndescent
python-scikit-learn
python-scipy
python-umap-learn))
+ (native-inputs (list python-flit-core))
(home-page "https://github.com/Teichlab/bbknn")
(synopsis "Batch balanced KNN")
(description "BBKNN is a batch effect removal tool that can be directly
- 27/59: gnu: tadbit: Add missing input., (continued)
- 27/59: gnu: tadbit: Add missing input., guix-commits, 2024/01/16
- 21/59: gnu: python-seaborn: Update to 0.13.1., guix-commits, 2024/01/16
- 45/59: gnu: datasette: Update to 1.0a7., guix-commits, 2024/01/16
- 57/59: gnu: python-clingraph: Update to 1.1.2., guix-commits, 2024/01/16
- 56/59: gnu: python-astroml: Make compatible with recent Matplot and Scipy., guix-commits, 2024/01/16
- 47/59: gnu: python-pandas: Update to 1.5.3., guix-commits, 2024/01/16
- 40/59: gnu: python-hicmatrix: Update to 17.1., guix-commits, 2024/01/16
- 09/59: gnu: python-lazy-loader: Update to 0.3., guix-commits, 2024/01/16
- 19/59: gnu: Add python-contourpy., guix-commits, 2024/01/16
- 24/59: gnu: python-cleanlab: Disable test_aux_inputs, enable other tests., guix-commits, 2024/01/16
- 55/59: gnu: python-bbknn: Update to 1.6.0.,
guix-commits <=
- 48/59: gnu: python-scikit-bio: Update to 0.5.9., guix-commits, 2024/01/16
- 51/59: gnu: python-telomerecat: Disable tests., guix-commits, 2024/01/16
- 54/59: gnu: python-geopandas: Update to 0.14.2., guix-commits, 2024/01/16
- 37/59: gnu: scvelo: Make compatible with latest matplotlib., guix-commits, 2024/01/16
- 20/59: gnu: python-matplotlib: Update to 3.8.2., guix-commits, 2024/01/16
- 42/59: gnu: python-pint: Add missing input., guix-commits, 2024/01/16
- 52/59: gnu: python-xarray: Update to 2023.12.0., guix-commits, 2024/01/16
- 53/59: gnu: python-dask: Propagate click., guix-commits, 2024/01/16
- 50/59: gnu: python-mysql-connector-python: Defuse time bomb., guix-commits, 2024/01/16
- 32/59: gnu: python-plastid: Update to 0.6.1., guix-commits, 2024/01/16