43/59: gnu: python-metpy: Update to 1.6.0.

[guix-commits]

rekado pushed a commit to branch wip-python-science
in repository guix.

commit 2cf9e10a53d62e6d35895ca8cd627243def00c53
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Wed Jan 10 15:45:57 2024 +0100

    gnu: python-metpy: Update to 1.6.0.
    
    * gnu/packages/geo.scm (python-metpy): Update to 1.6.0.
    [arguments]: Add phases 'fix-version-check and 
'hide-imp-deprecation-warnings.
    [native-inputs]: Add python-packaging; remove python-shapely and
    python-cartopy.
    
    Change-Id: I4a46a5e60b1904699475608146f2a09aefc07624
---
 gnu/packages/geo.scm | 26 +++++++++++++++++++++-----
 1 file changed, 21 insertions(+), 5 deletions(-)

diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm
index 3ec8d9f975..91d1358084 100644
--- a/gnu/packages/geo.scm
+++ b/gnu/packages/geo.scm
@@ -1493,13 +1493,13 @@ to create databases that are optimized for 
rendering/tile/map-services.")
 (define-public python-metpy
   (package
     (name "python-metpy")
-    (version "1.5.1")
+    (version "1.6.0")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "MetPy" version))
               (sha256
                (base32
-                "1is6rradl97k04hf27dhzla4y4j98hibran3rbz6xh226q1r9vmb"))))
+                "125nb1bmkqpdf19fq0mbbgzdjczn46lr9yqi7zgn6k62dzjm1gm7"))))
     (build-system pyproject-build-system)
     (arguments
      ;; Too many of the tests in the files below require online data.
@@ -1522,7 +1522,23 @@ to create databases that are optimized for 
rendering/tile/map-services.")
                     " and not test_zoom_xarray"
                     " and not test_parse_wpc_surface_bulletin"
                     " and not test_add_timestamp_xarray"
-                    " and not test_parse_wpc_surface_bulletin_highres"))))
+                    " and not test_parse_wpc_surface_bulletin_highres"))
+      #:phases
+      '(modify-phases %standard-phases
+         (add-after 'unpack 'fix-version-check
+           (lambda _
+             (substitute* "src/metpy/testing.py"
+               (("^( +)match = pattern.*" m indent)
+                (string-append indent "\
+version_spec = re.sub('[()]', '', version_spec)\n" m)))))
+         ;; The deprecation warning from python-future's use of imp breaks the
+         ;; tests.
+         (add-after 'unpack 'hide-imp-deprecation-warnings
+           (lambda _
+             (substitute* "pyproject.toml"
+               (("\"ignore:numpy.ndarray size changed:RuntimeWarning\"," m)
+                (string-append m "
+\"ignore:the imp module is deprecated\","))))))))
     (propagated-inputs (list python-importlib-resources
                              python-matplotlib
                              python-numpy
@@ -1533,8 +1549,8 @@ to create databases that are optimized for 
rendering/tile/map-services.")
                              python-scipy
                              python-traitlets
                              python-xarray))
-    (native-inputs (list python-cartopy python-netcdf4 python-pytest
-                         python-pytest-mpl python-shapely))
+    (native-inputs (list python-netcdf4 python-packaging python-pytest
+                         python-pytest-mpl))
     (home-page "https://github.com/Unidata/MetPy";)
     (synopsis "Collection of tools to deal with weather data")
     (description "MetPy is a collection of tools in Python for reading,