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34/40: gnu: Add r-scenic.
From: |
guix-commits |
Subject: |
34/40: gnu: Add r-scenic. |
Date: |
Tue, 23 Jan 2024 07:43:43 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 6e835cd380c040aefbf38959634022417b29eb5b
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Tue Jan 23 12:00:54 2024 +0100
gnu: Add r-scenic.
* gnu/packages/bioinformatics.scm (r-scenic): New variable.
Change-Id: Iff1f501a406ba1a12e49093a575e03facc98f303
---
gnu/packages/bioinformatics.scm | 37 +++++++++++++++++++++++++++++++++++++
1 file changed, 37 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4198acecda..40a264fd61 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1100,6 +1100,43 @@ high-throughput sequence analysis. The package is
primarily useful to
developers of other R packages who wish to make use of HTSlib.")
(license license:lgpl2.0+))))
+(define-public r-scenic
+ (let ((commit "cedf8490a634da550cea2c831544e5f7f14467d2")
+ (revision "1"))
+ (package
+ (name "r-scenic")
+ (version (git-version "1.3.1" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/aertslab/SCENIC")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "17ai0q260hdqbvm1km1s5dw93pgz4f546ycfii57jyy9m9jka7r0"))))
+ (properties `((upstream-name . "SCENIC")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-aucell
+ r-data-table
+ r-dynamictreecut
+ r-genie3
+ r-ggrepel
+ r-mixtools
+ r-nmf
+ r-rcistarget
+ r-rtsne))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/aertslab/SCENIC")
+ (synopsis
+ "SCENIC (Single Cell rEgulatory Network Inference and Clustering)")
+ (description "SCENIC (Single-cell regulatory network inference and
+clustering) is an R package to infer Gene Regulatory Networks and cell types
+from single-cell RNA-seq data.")
+ ;; As of commit cedf8490a634da550cea2c831544e5f7f14467d2 the license is
+ ;; GPLv3.
+ (license license:gpl3))))
+
(define-public r-singlet
(let ((commit "765a6c45081807a1522f0e8983e2417822a36f36")
(revision "1"))
- 23/40: gnu: r-rstanarm: Update to 2.32.1., (continued)
- 23/40: gnu: r-rstanarm: Update to 2.32.1., guix-commits, 2024/01/23
- 22/40: gnu: r-matrixextra: Update to 0.1.15., guix-commits, 2024/01/23
- 20/40: gnu: r-mcmcpack: Update to 1.7-0., guix-commits, 2024/01/23
- 04/40: gnu: r-gensa: Update to 1.1.14., guix-commits, 2024/01/23
- 07/40: gnu: r-ctrdata: Update to 1.17.0., guix-commits, 2024/01/23
- 13/40: gnu: r-nodbi: Update to 0.10.0., guix-commits, 2024/01/23
- 16/40: gnu: r-fmsb: Update to 0.7.6., guix-commits, 2024/01/23
- 27/40: gnu: r-maldiquant: Update to 1.22.2., guix-commits, 2024/01/23
- 24/40: gnu: r-lightgbm: Update to 4.3.0., guix-commits, 2024/01/23
- 18/40: gnu: r-rmpfr: Update to 0.9-5., guix-commits, 2024/01/23
- 34/40: gnu: Add r-scenic.,
guix-commits <=
- 32/40: gnu: r-desctools: Update to 0.99.53., guix-commits, 2024/01/23
- 31/40: gnu: r-plotly: Update to 4.10.4., guix-commits, 2024/01/23
- 35/40: gnu: Add python-pygsp., guix-commits, 2024/01/23
- 37/40: gnu: python-nose2: Update to 0.14.0., guix-commits, 2024/01/23
- 38/40: gnu: Add python-tasklogger., guix-commits, 2024/01/23
- 40/40: gnu: Add python-magic-impute., guix-commits, 2024/01/23
- 33/40: gnu: python-scipy: Update to 1.12.0., guix-commits, 2024/01/23
- 29/40: gnu: r-rsqlite: Update to 2.3.5., guix-commits, 2024/01/23