branch master updated: gnu: Add python-ega-download-client.

[guix-commits]

This is an automated email from the git hooks/post-receive script.

rekado pushed a commit to branch master
in repository guix.

The following commit(s) were added to refs/heads/master by this push:
     new fb79e58995 gnu: Add python-ega-download-client.
fb79e58995 is described below

commit fb79e589957880c95bb4e8e57e2a5023c8a696d6
Author: nafkhamdc <navid.afkhami@mdc-berlin.de>
AuthorDate: Wed Feb 14 20:27:46 2024 +0000

    gnu: Add python-ega-download-client.
    
    * gnu/packages/bioinformatics.scm (python-ega-download-client): New 
variable.
    
    Change-Id: I3233774975989f912281ab2e6ec6ad3362cae18b
    Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
---
 gnu/packages/bioinformatics.scm | 39 +++++++++++++++++++++++++++++++++++++++
 1 file changed, 39 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index bcfe3c2656..84577ef760 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2525,6 +2525,45 @@ Python.")
     ;; licensed lgpl2.1+
     (license (list license:expat license:lgpl2.1+))))
 
+(define-public python-ega-download-client
+  (package
+    (name "python-ega-download-client")
+    (version "5.1.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/EGA-archive/ega-download-client";)
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0k9rfq2yyvfxs5sq9lsm8krp9ddx4s18hv85ikf3b37zv24kpwjk"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      '(list "-k"
+             ;; These tests fail because they require internet access.
+             (string-append "not test_download.py"
+                            " and not test_htsget.py"
+                            " and not test_commands.py"))
+      #:phases
+      '(modify-phases %standard-phases
+         (add-after 'unpack 'relax-requirements
+           (lambda _
+             (substitute* "setup.py"
+               (("==") ">=")))))))
+    (propagated-inputs (list python-htsget python-psutil python-requests
+                             python-tqdm python-urllib3))
+    (native-inputs (list python-coverage python-pytest python-pyfakefs
+                         python-responses))
+    (home-page "https://github.com/EGA-archive/ega-download-client";)
+    (synopsis "EGA download client")
+    (description
+     "PyEGA3 is a tool for viewing and downloading files from authorized EGA
+datasets.")
+    (license license:asl2.0)))
+
 (define-public python-scdamandtools
   (package
     (name "python-scdamandtools")