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[bug#66129] [PATCH v2 12/20] gnu: Add suitesparse-cholmod.
From: |
David Elsing |
Subject: |
[bug#66129] [PATCH v2 12/20] gnu: Add suitesparse-cholmod. |
Date: |
Thu, 21 Sep 2023 13:27:47 +0000 |
* gnu/packages/maths.scm (suitesparse-cholmod): New variable.
---
gnu/packages/maths.scm | 82 ++++++++++++++++++++++++++++++++++++++++++
1 file changed, 82 insertions(+)
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 3f80029414..271ae8137b 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -5289,6 +5289,88 @@ (define-public metis-suitesparse
(string-append "-DGKLIB_PATH=" #$gklib-suitesparse)))))
(inputs (list suitesparse-config gklib-suitesparse))))
+(define-public suitesparse-cholmod
+ (package
+ (name "suitesparse-cholmod")
+ (version "4.2.0")
+ (source (suitesparse-package-src name "CHOLMOD"))
+ (build-system cmake-build-system)
+ (arguments
+ (list
+ #:tests? #f
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'set-cmake-module-path
+ (lambda _
+ (substitute* "CMakeLists.txt"
+ (("set.*CMAKE_MODULE_PATH.*")
+ (string-append
+ "set(CMAKE_MODULE_PATH "
+ (string-join
+ (map (lambda (path)
+ (string-append path "/lib/cmake/SuiteSparse"))
+ (list #$suitesparse-amd
+ #$suitesparse-camd
+ #$suitesparse-ccolamd
+ #$suitesparse-colamd
+ #$suitesparse-config)))
+ ")\nset(DUMMY\n"))
+ (("add_subdirectory.*GPU.*") "\n")
+ ((".*cmake_modules/FindCHOLMOD_CUDA.cmake.*") "\n"))))
+ (add-after 'unpack 'use-external-metis
+ (lambda _
+ (let ((port (open-file "CMakeLists.txt" "a")))
+ (display
+ (string-append
+ "find_library(METIS_LIBRARY NAME metis PATHS ENV
LIBRARY_PATH)
+get_filename_component(METIS_LIBRARY ${METIS_LIBRARY} REALPATH)
+find_library(GKLIB_LIBRARY NAME GKlib PATHS ENV LIBRARY_PATH)
+get_filename_component(GKLIB_LIBRARY ${GKLIB_LIBRARY} REALPATH)
+target_link_libraries(CHOLMOD PRIVATE ${METIS_LIBRARY} ${GKLIB_LIBRARY})
+target_link_libraries(CHOLMOD_static PRIVATE ${METIS_LIBRARY}
${GKLIB_LIBRARY})")
+ port)
+ (close-port port))
+ (delete-file "Partition/cholmod_metis_wrapper.c")
+ (delete-file "Partition/cholmod_metis_wrapper.h")
+ (substitute* "Partition/cholmod_metis.c"
+ (("#include \"cholmod_metis_wrapper\\.h\"") "")
+ (("#include \"SuiteSparse_metis/include/metis.h\"")
+ "#include <metis.h>")
+ (("SuiteSparse_metis_METIS") "METIS"))))
+ (add-after 'build 'build-doc
+ (lambda _
+ (with-directory-excursion "../source/Doc"
+ (invoke "make"))))
+ (add-after 'install 'install-doc
+ (lambda _
+ (install-file "../source/Doc/CHOLMOD_UserGuide.pdf"
+ (string-append #$output "/share/doc/"
+ #$name "-" #$version))))
+ (replace 'install-license-files
+ (lambda _
+ (let ((out (string-append #$output
+ "/share/doc/" #$name "-" #$version)))
+ (install-file "../source/Doc/License.txt" out)
+ (install-file "../source/Core/lesser.txt" out)
+ (install-file "../source/MatrixOps/gpl.txt" out)))))))
+ (inputs
+ (list gklib-suitesparse
+ metis-suitesparse
+ openblas
+ suitesparse-amd
+ suitesparse-camd
+ suitesparse-ccolamd
+ suitesparse-colamd
+ suitesparse-config))
+ (native-inputs (list (texlive-updmap.cfg '())))
+ (home-page "https://people.engr.tamu.edu/davis/suitesparse.html")
+ (synopsis "Library for solving sparse symmetric positive definite linear
+equations")
+ (description "CHOLMOD is a set of routins for factorizing sparse symmetrix
+positive definite matrices, updating/downdating sparse Cholesky factorizations
+and other related operations.")
+ (license (list license:gpl2+ license:lgpl2.1+))))
+
(define-public suitesparse
(package
(name "suitesparse")
--
2.41.0
- [bug#66129] [PATCH v2 02/20] gnu: Add suitesparse-config., (continued)
- [bug#66129] [PATCH v2 02/20] gnu: Add suitesparse-config., David Elsing, 2023/09/21
- [bug#66129] [PATCH v2 03/20] gnu: Add suitesparse-amd., David Elsing, 2023/09/21
- [bug#66129] [PATCH v2 06/20] gnu: Add suitesparse-colamd., David Elsing, 2023/09/21
- [bug#66129] [PATCH v2 05/20] gnu: Add suitesparse-camd., David Elsing, 2023/09/21
- [bug#66129] [PATCH v2 08/20] gnu: Add gklib., David Elsing, 2023/09/21
- [bug#66129] [PATCH v2 07/20] gnu: Add suitesparse-ccolamd., David Elsing, 2023/09/21
- [bug#66129] [PATCH v2 09/20] gnu: Add metis-5.2., David Elsing, 2023/09/21
- [bug#66129] [PATCH v2 17/20] gnu: Add suitesparse-mongoose., David Elsing, 2023/09/21
- [bug#66129] [PATCH v2 10/20] gnu: Add gklib-suitesparse., David Elsing, 2023/09/21
- [bug#66129] [PATCH v2 11/20] gnu: Add metis-suitesparse., David Elsing, 2023/09/21
- [bug#66129] [PATCH v2 12/20] gnu: Add suitesparse-cholmod.,
David Elsing <=
- [bug#66129] [PATCH v2 19/20] gnu: Add suitesparse-spqr., David Elsing, 2023/09/21
- [bug#66129] [PATCH v2 13/20] gnu: Add suitesparse-cxsparse., David Elsing, 2023/09/21
- [bug#66129] [PATCH v2 14/20] gnu: Add suitesparse-klu., David Elsing, 2023/09/21
- [bug#66129] [PATCH v2 16/20] gnu: Add suitesparse-rbio., David Elsing, 2023/09/21
- [bug#66129] [PATCH v2 15/20] gnu: Add suitesparse-ldl., David Elsing, 2023/09/21
- [bug#66129] [PATCH v2 20/20] gnu: Add suitesparse-umfpack., David Elsing, 2023/09/21
- [bug#66129] [PATCH v2 18/20] gnu: Add suitesparse-spex., David Elsing, 2023/09/21