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[bug#66843] [PATCH 11/11] gnu: Add r-radiogx.
From: |
Mădălin Ionel Patrașcu |
Subject: |
[bug#66843] [PATCH 11/11] gnu: Add r-radiogx. |
Date: |
Tue, 31 Oct 2023 11:57:29 +0100 |
* gnu/packages/bioconductor.scm (r-radiogx): New variable.
Change-Id: I8fd06a18bd68f9a3baa2cc129d62aef06528bc97
---
gnu/packages/bioconductor.scm | 44 +++++++++++++++++++++++++++++++++++
1 file changed, 44 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 091cf98b5c..69adea13e5 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -7848,6 +7848,50 @@ (define-public r-r4rna
with numerical methods for computing statistics for each.")
(license license:gpl3)))
+(define-public r-radiogx
+ (package
+ (name "r-radiogx")
+ (version "2.4.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "RadioGx" version))
+ (sha256
+ (base32 "18zqfnwjil4mv7fgh4wvnniyybmyqkg0hk2wc57rcn0mlppa3602"))))
+ (properties `((upstream-name . "RadioGx")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-assertthat
+ r-biobase
+ r-biocgenerics
+ r-biocparallel
+ r-catools
+ r-coregx
+ r-data-table
+ r-downloader
+ r-magicaxis
+ r-matrixstats
+ r-rcolorbrewer
+ r-reshape2
+ r-s4vectors
+ r-scales
+ r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/RadioGx")
+ (synopsis "Analysis of large-scale radio-genomic data")
+ (description
+ "This package is a computational tool box for radio-genomic analysis which
+integrates radio-response data, radio-biological modelling and comprehensive
+cell line annotations for hundreds of cancer cell lines. The @code{RadioSet}
+class enables creation and manipulation of standardized datasets including
+information about cancer cells lines, radio-response assays and dose-response
+indicators. Included methods allow fitting and plotting dose-response data
+using established radio-biological models along with quality control to
validate
+results. Additional functions related to fitting and plotting dose response
+curves, quantifying statistical correlation and calculating @acronym{AUC, area
+under the curve} or @acronym{SF, survival fraction} are included.")
+ (license license:gpl3)))
+
(define-public r-raggedexperiment
(package
(name "r-raggedexperiment")
--
2.41.0
- [bug#66843] [PATCH] gnu: Add r-radiogx, r-coregx, r-piano, r-bench, r-profmem, r-relations, r-magicaxis, r-celestial, r-nistunits, r-r4rna and r-r3cseq., Mădălin Ionel Patrașcu, 2023/10/31
- [bug#66843] [PATCH 01/11] gnu: Add r-r3cseq., Mădălin Ionel Patrașcu, 2023/10/31
- [bug#66843] [PATCH 02/11] gnu: Add r-r4rna., Mădălin Ionel Patrașcu, 2023/10/31
- [bug#66843] [PATCH 08/11] gnu: Add r-bench., Mădălin Ionel Patrașcu, 2023/10/31
- [bug#66843] [PATCH 04/11] gnu: Add r-celestial., Mădălin Ionel Patrașcu, 2023/10/31
- [bug#66843] [PATCH 05/11] gnu: Add r-magicaxis., Mădălin Ionel Patrașcu, 2023/10/31
- [bug#66843] [PATCH 07/11] gnu: Add r-profmem., Mădălin Ionel Patrașcu, 2023/10/31
- [bug#66843] [PATCH 03/11] gnu: Add r-nistunits., Mădălin Ionel Patrașcu, 2023/10/31
- [bug#66843] [PATCH 11/11] gnu: Add r-radiogx.,
Mădălin Ionel Patrașcu <=
- [bug#66843] [PATCH 09/11] gnu: Add r-piano., Mădălin Ionel Patrașcu, 2023/10/31
- [bug#66843] [PATCH 10/11] gnu: Add r-coregx., Mădălin Ionel Patrașcu, 2023/10/31
- [bug#66843] [PATCH 06/11] gnu: Add r-relations., Mădălin Ionel Patrașcu, 2023/10/31
- bug#66843: [PATCH] gnu: Add r-radiogx, r-coregx, r-piano, r-bench, r-profmem, r-relations, r-magicaxis, r-celestial, r-nistunits, r-r4rna and r-r3cseq., Ricardo Wurmus, 2023/10/31