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[bug#66966] [PATCH 05/13] gnu: Add r-basics.
From: |
Mădălin Ionel Patrașcu |
Subject: |
[bug#66966] [PATCH 05/13] gnu: Add r-basics. |
Date: |
Mon, 6 Nov 2023 12:06:41 +0100 |
* gnu/packages/bioconductor.scm (r-basics): New variable.
Change-Id: I6f0afeeb41f667d780707af65034d5ba978f0d4a
---
gnu/packages/bioconductor.scm | 50 +++++++++++++++++++++++++++++++++++
1 file changed, 50 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 737d1ca2de..184972afb5 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -22308,6 +22308,56 @@ (define-public r-basic4cseq
and a multi-scale contact profile.")
(license license:lgpl3)))
+(define-public r-basics
+ (package
+ (name "r-basics")
+ (version "2.14.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BASiCS" version))
+ (sha256
+ (base32 "0kf215n151sxphc5w9h4i2xsk7lmysi4abwcpyz4slbwhpki3ac8"))))
+ (properties `((upstream-name . "BASiCS")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-assertthat
+ r-biobase
+ r-biocgenerics
+ r-biocparallel
+ r-coda
+ r-cowplot
+ r-ggextra
+ r-ggplot2
+ r-hexbin
+ r-mass
+ r-matrix
+ r-matrixstats
+ r-posterior
+ r-rcpp
+ r-rcpparmadillo
+ r-reshape2
+ r-s4vectors
+ r-scran
+ r-scuttle
+ r-singlecellexperiment
+ r-summarizedexperiment
+ r-viridis))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/catavallejos/BASiCS")
+ (synopsis "Bayesian analysis of single-cell sequencing data")
+ (description
+ "@acronym{BASiCS, Bayesian analysis of single-cell sequencing data} is an
+integrated Bayesian hierarchical model to perform statistical analyses of
+single-cell RNA sequencing datasets in the context of supervised experiments
+(where the groups of cells of interest are known a priori. BASiCS performs
+built-in data normalisation (global scaling) and technical noise quantification
+(based on spike-in genes). BASiCS provides an intuitive detection criterion
for
+highly (or lowly) variable genes within a single group of cells. Additionally,
+BASiCS can compare gene expression patterns between two or more pre-specified
+groups of cells.")
+ (license license:gpl3)))
+
(define-public r-basilisk-utils
(package
(name "r-basilisk-utils")
--
2.41.0
- [bug#66966] [Patch] gnu: Add r-bcrank, r-bbcanalyzer, r-baynorm, r-bb, r-bayesspace, r-rcppdist, r-bayesknockdown, r-basicstarrseq, r-basics, r-basic4cseq, r-bsgenome-ecoli-ncbi-20080805, r-bags and r-breastcancervdx, Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 01/13] gnu: Add r-breastcancervdx., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 05/13] gnu: Add r-basics.,
Mădălin Ionel Patrașcu <=
- [bug#66966] [PATCH 02/13] gnu: Add r-bags., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 10/13] gnu: Add r-bb., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 04/13] gnu: Add r-basic4cseq., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 07/13] gnu: Add r-bayesknockdown., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 11/13] gnu: Add r-baynorm., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 13/13] gnu: Add r-bcrank., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 09/13] gnu: Add r-bayesspace., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 08/13] gnu: Add r-rcppdist., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 12/13] gnu: Add r-bbcanalyzer., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 03/13] gnu: Add r-bsgenome-ecoli-ncbi-20080805., Mădălin Ionel Patrașcu, 2023/11/06
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