I recently installed the most recent Frescobaldi 2.0.4 on my Windoze box (XP Pro), and last night got the latest Lily 2.15.33.
Now when I try to work on a file, the point-and-click seems to be broken. When I mouse over a note in the pdf, it puts the cursor in the editor on a spot right at the end of the file, not on the right place.