bug#45283: closed ([PATCH] gnu: Add r-gagedata.)

[GNU bug Tracking System]

Your message dated Thu, 17 Dec 2020 12:33:03 +0100
with message-id <87im90oefk.fsf@elephly.net>
and subject line Re: [PATCH] gnu: Add r-gagedata.
has caused the debbugs.gnu.org bug report #45283,
regarding [PATCH] gnu: Add r-gagedata.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs@gnu.org.)


-- 
45283: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=45283
GNU Bug Tracking System
Contact help-debbugs@gnu.org with problems
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-gagedata.
>
>
>
>
> Date: 
>
> Wed, 16 Dec 2020 23:17:01 +0100
>
>
>
>
> * gnu/packages/bioconductor.scm (r-gagedata): New variable.
> ---
>  gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
>  1 file changed, 26 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 85ee56c539..36274d0b39 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -9187,3 +9187,29 @@ CATALYST (Cytometry dATa anALYSis Tools) to provide a 
> pipeline for
>  preprocessing of cytometry data, including i) normalization using bead
>  standards, ii) single-cell deconvolution, and iii) bead-based compensation.")
>      (license license:gpl2+)))
> +
> +(define-public r-gagedata
> +  (package
> +    (name "r-gagedata")
> +    (version "2.28.0")
> +    (source
> +     (origin
> +       (method url-fetch)
> +       (uri (bioconductor-uri "gageData" version 'experiment))
> +       (sha256
> +        (base32 "16lmnvmbykvbdgwyx7r2jc217gb9nidn81860v5kri99g97j4jdn"))))
> +    (properties `((upstream-name . "gageData")))
> +    (build-system r-build-system)
> +    (home-page "https://bioconductor.org/packages/gageData";)
> +    (synopsis "Auxillary data for gage package")
> +    (description
> +     "This is a supportive data package for the software package @code{gage}.
> +However, the data supplied here are also useful for gene set or pathway
> +analysis or microarray data analysis in general.  In this package, we provide
> +two demo microarray dataset: GSE16873 (a breast cancer dataset from GEO) and
> +BMP6 (originally published as an demo dataset for GAGE, also registered as
> +GSE13604 in GEO).  This package also includes commonly used gene set data based
> +on KEGG pathways and GO terms for major research species, including human,
> +mouse, rat and budding yeast.  Mapping data between common gene IDs for budding
> +yeast are also included.")
> +    (license license:gpl2+)))
> -- 
> 2.29.2
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> Re: [PATCH] gnu: Add r-gagedata.
>
>
>
>
> Date: 
>
> Thu, 17 Dec 2020 12:33:03 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.4.13; emacs 27.1
>
>
>
>
> Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:
>
> > * gnu/packages/bioconductor.scm (r-gagedata): New variable.
>
> Applied, thanks!
>
> -- 
> Ricardo
>
>
> --- End Message ---